Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq229 89.7 3e-13 seq238 86.0 3e-12 seq14 86.0 3e-12 seq9 82.4 4e-11 >seq229 Length=492751 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||| ||| | |||||| | |||||||||| ||||||| |||||||||||| Sbjct 155372 AATTAAAAAGCAACTGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 155431 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 155432 CCACGCTCTAACCAACTGAGCTAACCGGCC 155461 >seq238 Length=377707 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11446 AAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 157585 AAAATCCACGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 157644 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||||||||||||| ||||| Sbjct 157645 CTCTAACCAACTGAGCTAACCGGCCG 157670 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 336195 AAAAATACTAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 336136 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 336135 CTCTAACCAACTGAGCTAACCGGCC 336111 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 165956 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 166015 Query 11528 CC 11529 || Sbjct 166016 CC 166017 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 310105 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 310046 Query 11528 CC 11529 || Sbjct 310045 CC 310044 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 323268 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 323209 Query 11528 CC 11529 || Sbjct 323208 CC 323207 >seq14 Length=32092909 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 25814084 TGGCCCGTACAGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 25814143 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 25814144 TGAGCTAACTGGCC 25814157 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 20838266 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 20838207 Query 11528 CCG 11530 ||| Sbjct 20838206 CCG 20838204 >seq9 Length=40439880 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 38904453 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 38904394 Query 11528 CC 11529 || Sbjct 38904393 CC 38904392 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261450263961220