Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq40 102 9e-17 >seq40 Length=19741185 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||||||||| |||||| | || | Sbjct 7972815 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGGAGAAGGTGA 7972874 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || || || ||| ||||| |||||||| | || || | Sbjct 7972875 TGCCCCAGGCTGAGAACCAAAGTCCAGACATCAAGGAGCATGTGAACTCCTTAGGAGAAA 7972934 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | | |||||||| ||||| Sbjct 7972935 AGTTGAAGACCCTCAGGCT 7972953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||||||||||||||||||||| ||||||||||| || || ||||| | Sbjct 7975078 AGCTCCAAGAGAAAGGAGTCTACAAAGCCATGAGCGAATTTGACATCTTCATCAACTACA 7975137 Query 10419 TAGAAGCATACATGACCATGA 10439 ||||||| ||||| || |||| Sbjct 7975138 TAGAAGCCTACATTACAATGA 7975158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547291311427200