Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq67 201 2e-46 seq65 105 9e-18 >seq67 Length=11548157 Score = 201 bits (222), Expect = 2e-46 Identities = 215/284 (76%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8692 CGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCC 8751 ||| || || ||||||||| |||| || ||||||| | || | |||||||||| Sbjct 1432048 CGGGCAGCCCTTGACGTTGTGGCAGATCAGGGACTGGAGGGAGGCGGTGTTGACGATCCG 1431989 Query 8752 AAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTT 8811 || ||||| || || ||||||||||| || |||||||| | || ||||||||| ||| Sbjct 1431988 GAAGCCCACCTCGCCCCCGAAGGTGCTCGGCTTCCAGTACTCGGGCGAGCAGATGGGGTT 1431929 Query 8812 CGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGAT 8871 |||||||||| || ||||| || || ||||||||||| | ||| |||| |||||||| Sbjct 1431928 GCCCATGAGGCCCTTCAGGGAGAAGGGGGCCCCCAGCTCCACCATGGTCTCCCCGAAGAT 1431869 Query 8872 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTC 8931 ||||| || |||||||| ||||||| || ||| ||||| ||||| || |||||||| Sbjct 1431868 GGCGTCCGGCCGGGGCTTCTCCACCAGGAGGGCGGGGTACAGCTCCATGGCGTCGATGTC 1431809 Query 8932 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || ||| || || | || || ||||| || |||| Sbjct 1431808 ACCGTACAGCGCCTCCAGCTCCGAGGCCATCTCCTTCTCCCCTG 1431765 Score = 122 bits (134), Expect = 1e-22 Identities = 180/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | || || || ||||||| || || || ||||| | ||| || || || Sbjct 1428478 TCACCGATCAGTATCAGCCGGCTGGTCTGGAAGAGCTGCTCGTCCCCCCACTCGGGGTGC 1428419 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||| || || ||||| | |||||| |||| |||||||| || ||||||||| Sbjct 1428418 TCCTGCCGCAGCACGTCACACACCCGGTTGTGCTCCCGAAGCCAGATGGTGGCGTACATC 1428359 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || ||||||| || || ||| || || || || | |||| | || ||| Sbjct 1428358 ATGAGCCCTGGCACCATCCCGAACAGCTCCTGGCCCACGGCAAAGCGCAGGTGCTCCGGC 1428299 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || ||||||||| | |||| || ||| | ||| || ||||| || Sbjct 1428298 ACGTGGGGCGGGTAGATCATGGCCGCCTGCGTCTCCCCGACGGTGGGCGGGTACATCTCC 1428239 Query 9850 CCGTCAATAATCTGA 9864 ||||| || |||||| Sbjct 1428238 CCGTCGATGATCTGA 1428224 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 || |||||||| |||| || || |||||||| || || ||| || ||| | || Sbjct 1427334 CTCACCCCATGGCCCAAGCCCTTGGTGAAGGCTGGCCCCCGCTTATGGTCCGTCTTGAAG 1427275 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| || ||| | || ||||||||||| | |||||||||||| || ||| Sbjct 1427274 AACTGGTGGGTGAAGTGCTGGGCGAAGAAGGCAAACATCATGTTGGTGCCCTGCGGGTCG 1427215 Query 10149 GGAGTGAAGGTCCTCC 10164 || |||| |||||| Sbjct 1427214 GGGATGAACTTCCTCC 1427199 >seq65 Length=11877709 Score = 105 bits (116), Expect = 9e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 8740 CTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGA 8799 |||||| || ||| ||| ||||| || || || || || |||||||| |||| || Sbjct 11165730 CTTGACAATGTTAAAGCCCGTCTCTCCACCAAATGTACTTGGCTTCCAGTACTCCGGAGA 11165789 Query 8800 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCT 8859 |||||| ||| | | ||| || ||||||||||| |||||||| | || | || || Sbjct 11165790 ACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATTTCTATCATACT 11165849 Query 8860 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCAC 8919 ||| || || |||| ||| || || ||| |||| | | ||| | ||| ||||||| Sbjct 11165850 CTCCCCAAAAATGGAGTTTGGGTGGCACTTCTCCAGAAGCAGTCCCGGGTAGAACTCCAA 11165909 Query 8920 AGCCTCGATGTCTCCGTA 8937 || ||||||||||| || Sbjct 11165910 GGCATCGATGTCTCCATA 11165927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708411037486800