Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4344 150 3e-32 seq229 141 1e-29 seq238 136 6e-28 seq117 122 1e-23 >seq4344 Length=1901 Score = 150 bits (166), Expect = 3e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| | | | || |||||||||||||| ||||| ||||| || ||| Sbjct 1846 GCCAAACGTCACCGCAAAGTTTTGCGTGATAACATCCAAGGTATCACGAAGCCCGCGATC 1787 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || ||||| || || || ||| || || || | |||||||| | | Sbjct 1786 CGTCGTTTGGCGCGACGTGGCGGCGTTAAACGTATCAGCGGTTTAATATATGAAGAAACT 1727 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| |||||| | | ||| | | |||||| || |||| || Sbjct 1726 CGTGGCGTACTGAAGTCGTTCCTCGAAAATGTTGTTCGCGATGCTGTCACCTATTGTGAA 1667 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || | ||||| | ||||| || ||||||||||| || Sbjct 1666 CACGCGAAAAGGAAGACCGTAACGGCAATGGACGTTGTCTACGCTTTGAAACGTCAGGGT 1607 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| ||||| || || || ||||| ||| Sbjct 1606 CGTACAATTTACGGCTTCGGCGGTTAACCTT 1576 >seq229 Length=492751 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 300384 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 300325 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| ||||||| | |||| || |||| Sbjct 300324 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 300265 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 300264 TCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 300205 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 300204 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 300145 Query 16672 CCG 16674 ||| Sbjct 300144 CCG 300142 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 262122 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 262181 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| ||| | |||| || |||| Sbjct 262182 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGACTCATCTACGAGGAGAC 262241 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 262242 CCGCGGGGTGCTCAAGGTCTTTCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 262301 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 262302 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 262361 Query 16672 CCG 16674 ||| Sbjct 262362 CCG 262364 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 396900 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 396841 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 396840 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 396781 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 396780 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 396721 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 396720 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 396661 Query 16672 CCG 16674 ||| Sbjct 396660 CCG 396658 >seq238 Length=377707 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 122828 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 122887 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 122888 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 122947 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 122948 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 123007 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 123008 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 123067 Query 16672 CCG 16674 ||| Sbjct 123068 CCG 123070 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 101478 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 101537 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 101538 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 101597 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 101598 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 101657 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 101658 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 101717 Query 16672 CCG 16674 ||| Sbjct 101718 CCG 101720 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 127553 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 127494 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 127493 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 127434 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 127433 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 127374 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 127373 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 127314 Query 16672 CCG 16674 ||| Sbjct 127313 CCG 127311 Score = 95.1 bits (104), Expect = 2e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 348855 CGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACC 348796 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| ||| |||| || ||| || ||| |||||| Sbjct 348795 CGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCTGTCACCTACACCGAG 348736 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||| Sbjct 348735 CACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 348676 Query 16673 CG 16674 || Sbjct 348675 CG 348674 >seq117 Length=5058885 Score = 122 bits (134), Expect = 1e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || ||||| |||||||| || ||||||||||| || | Sbjct 506527 CGCGAAGCGGCACCGCA-AGGTGTTGCGAGACAACATCCAGGGCATCACCAAGCCGGCGA 506585 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 506586 TCAGGCGCCTGGCCCGGCGCGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGA 506645 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 506646 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 506705 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 506706 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 506765 Query 16671 GCCGTA 16676 |||||| Sbjct 506766 GCCGTA 506771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063455726585