Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq61 154 2e-32 >seq61 Length=12918418 Score = 154 bits (170), Expect = 2e-32 Identities = 405/609 (67%), Gaps = 17/609 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATG----AGAAAACATTATCTTCtttttttGACATAAT 21177 ||| |||| || || ||||| || | | |||| ||||||| | | ||||| | Sbjct 2373264 TTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCAC 2373323 Query 21178 TCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGA 21237 |||||| | ||||| || || ||||| || || || || || ||||| ||||||| ||| Sbjct 2373324 TCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGA 2373383 Query 21238 TATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTC 21297 ||| ||||| || |||||||||||||| | | || | || | |||| || || Sbjct 2373384 GATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCTC 2373443 Query 21298 TGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATAC 21356 | |||| ||| || | |||||||| ||||| || |||||| || ||||| | Sbjct 2373444 -CAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 21357 CGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA 21416 | || | || ||||| | || | || | || | |||||| || || | Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCACTGA 2373562 Query 21417 CAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTAAACATCAA 21474 || ||||| || || || | ||| | | || ||||| ||||||| Sbjct 2373563 GGAT--TATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAG 2373620 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||| ||||| || ||||| |||||||| || || | |||||| |||||||| | Sbjct 2373621 GCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAG 2373680 Query 21535 ACCGGGCATTAATCCT-CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGA 21593 || ||||| | |||| || ||||| | ||| ||||| || ||||| | || ||||||| Sbjct 2373681 GCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGA 2373740 Query 21594 AAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG--ATTCTTTATC 21651 | || || || || || ||||| || | | ||||| || || | || ||| | || Sbjct 2373741 AGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTGTC 2373799 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711 |||| ||| ||||| | ||||| | || | |||| ||||| |||||||| Sbjct 2373800 CAATCCCCA---CAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGC 2373856 Query 21712 TTTTAAAAG 21720 || || || Sbjct 2373857 ATTGAAGAG 2373865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531815396677800