Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq61 273 3e-68 seq119 141 1e-28 seq28 107 2e-18 seq37 105 8e-18 >seq61 Length=12918418 Score = 273 bits (302), Expect = 3e-68 Identities = 634/943 (67%), Gaps = 27/943 (3%) Strand=Plus/Plus Query 32952 GTTTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTATCTTCTTGA---GACATAA 33004 ||||||||| ||||| |||| || | ||||| ||||||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064 ||||||| | || || || | || | || || || || ||||| || ||||||| || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 33065 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT 33124 | ||||| |||||||| ||||| ||||| || | ||| || | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 33125 CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTC 33184 | || | ||| || | || ||||| ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 33185 CTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTG 33244 | || || || || || | ||| ||||||| || || ||||| || || ||| ||| Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTG 2373561 Query 33245 TT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 || || | | || | | || ||| || | || |||||| ||||||| Sbjct 2373562 AGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGG 2373621 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || || ||||| | |||||| || || ||||| ||||| |||||||| ||||| Sbjct 2373622 CAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGG 2373681 Query 33364 CCGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || | ||||| ||||| ||||| || || || || ||||||||||| Sbjct 2373682 CCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAA 2373741 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 ||| ||||| ||||| ||||| || | | | ||||| || || || || ||| | Sbjct 2373742 GATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGT 2373798 Query 33483 CCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||| | | ||||| || |||||||| || ||||||||||| ||||| || |||| Sbjct 2373799 CCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 33539 TAAAGAGATAGtttt---tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||| ||||| || | || ||||||| |||||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 ||||||| || || ||||||| |||| | ||||| || |||||||| | || || | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 33656 TAATCTGTACTTCTGTACAAAA---TCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | ||||| |||||| | ||| | | || ||| || ||| | || || ||||| Sbjct 2373976 TGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-G 2374034 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 ||| || || || |||| | || | | || || | ||||| || | || | Sbjct 2374035 GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGT 2374094 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 || | | ||| || || || | | ||||| || | ||||| || || ||||| | Sbjct 2374095 CCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGG 2374154 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 |||| | ||||| | |||||| || | || | || ||||| Sbjct 2374155 CCTTCCTGTACATCTGCCAGATATCGTGGTACTCGACGGGGAA 2374197 >seq119 Length=4927305 Score = 141 bits (156), Expect = 1e-28 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| | | ||| Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 62457 CTATTTCTAAGACCGTAT 62474 || ||||||| ||| ||| Sbjct 3058907 CTGTTTCTAATACCATAT 3058890 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 cactaaatagtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| |||||||||||||| | || || || || || || ||||| || | Sbjct 3027861 CACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCAGGA 3027802 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | ||||| || || || | || || | || || ||| | ||||| |||| ||| || | Sbjct 3027801 TAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTATCTA 3027742 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| |||||| |||||| || || ||||| Sbjct 3027741 GTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCAT 3027696 >seq28 Length=26224161 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 21882816 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 21882757 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 |||||||| || | ||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 21882756 AGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 21882698 >seq37 Length=21270769 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| ||||| |||||||| ||||| || ||||| || || | |||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||| ||||| ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 33446 C 33446 | Sbjct 14837933 C 14837933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622847178040200