Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1111 105 6e-18 seq119 95.1 1e-14 seq94 87.8 2e-12 >seq1111 Length=9394 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| | ||| | |||||| | | ||| | ||| ||||| || || |||||||| Sbjct 86 ATGATGCCCCTGCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAG 145 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | |||||| ||||| ||||| ||||| || | || | | ||||||||||| Sbjct 146 TCCGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCC 205 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| |||||| |||| | ||| | || || ||| | Sbjct 206 GGCGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGC 265 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| | ||| || || || || || || || || |||||||| Sbjct 266 TCTACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq119 Length=4927305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| ||| | || | ||||| ||||| |||||||||||||||| || ||||||| Sbjct 3051867 TGTATTCTACTACTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGAT 3051808 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||||||||| ||||| | || |||||||||||||| || Sbjct 3051807 TACTTTTCCGATTGCAGGAATCTTTGTAGAGCATGTAGGG 3051768 >seq94 Length=7567239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||| || | ||| | ||||||||| || ||||||||||| || Sbjct 6929589 AGCCACCCCTCAGACGCAGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAG 6929648 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| || |||| | | ||||||||| || | Sbjct 6929649 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 6929708 Query 131126 GGATTCCTTCTTTGTC 131141 |||| ||||| || || Sbjct 6929709 GGATGCCTTCCTTATC 6929724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471937012444800