Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1111 104 2e-17 >seq1111 Length=9394 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 16715 CGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTT 16774 || || | ||| ||| |||||| |||||||| || || ||||||||||| | | ||| Sbjct 98 CGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTG 157 Query 16775 TTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCC 16834 | | ||||||| |||||||||||| |||| || |||| |||||| || | ||| Sbjct 158 CGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCT 217 Query 16835 TCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCA 16892 || ||||| || || ||| || | | | | ||||| | |||||| || | Sbjct 218 TCCTTGTCCTGGATTTTGGCT--TTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGA 275 Query 16893 CGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||| || || ||||| || || ||||| |||||||| Sbjct 276 GGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405024584106550