Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq183 113 3e-20 seq21 111 1e-19 seq13 111 1e-19 seq4318 107 1e-18 seq16 102 5e-17 seq83 98.7 7e-16 seq78 98.7 7e-16 seq5 89.7 3e-13 seq134 87.8 1e-12 >seq183 Length=1582113 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 1408005 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCCT 1407946 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 1407945 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 1407911 >seq21 Length=29177037 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || | |||||||||| ||||||||| || ||||| ||||||||| |||| | || Sbjct 16234652 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 16234711 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||| || ||||| || | | |||||||| | || | ||||| || || Sbjct 16234712 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 16234771 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || ||||| Sbjct 16234772 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 16234831 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 16234832 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || | |||||||||| ||||||||| || ||||| ||||||||| |||| | || Sbjct 25852505 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 25852564 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||| || ||||| || | | |||||||| | || | ||||| || || Sbjct 25852565 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 25852624 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || ||||| Sbjct 25852625 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 25852684 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 25852685 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||| |||||||||| | |||||||||| ||||||||||| Sbjct 5489814 CTCTCTTTTCAAAGTTCTTTTTAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCAT 5489873 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 5489874 GTAGGTATTTAGCCTTA 5489890 >seq4318 Length=1986 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1335 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 1394 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||| ||| ||| Sbjct 1395 AGTCATATTCAGCTTTA 1411 >seq16 Length=30823778 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || | |||||||||| ||||||||| || || || ||||||||| |||| | || Sbjct 1301368 CAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGACAAAGTACGTCCATC 1301427 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||| || ||||| || | | |||||||| | || | ||||| || || Sbjct 1301428 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 1301487 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| || || || | || ||||| Sbjct 1301488 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTGATAGT 1301547 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 1301548 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 >seq83 Length=8991396 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 1910807 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTAACTATCGGTCTCGT 1910866 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1910867 GCCGGTATTTAGCCTTA 1910883 >seq78 Length=9970888 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 7537 CTCTCTCCTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 7478 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7477 GCCGGTATTTAGCCTTA 7461 >seq5 Length=50938590 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||| Sbjct 9466282 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTATTTGTTGACTATCGGTCTCAT 9466223 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9466222 GCCGGTATTTAGCCTTA 9466206 >seq134 Length=4000202 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || | |||||||||| ||||||||| || | ||| || |||||| || | || Sbjct 2759348 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACACCCATC 2759407 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||| || ||||| || | | |||||||||| || | ||||| || || Sbjct 2759408 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATC 2759467 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || | | || ||||| Sbjct 2759468 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTGATAGT 2759527 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 2759528 CTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334894764539195