Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq61 161 1e-34 seq37 82.4 8e-11 >seq61 Length=12918418 Score = 161 bits (178), Expect = 1e-34 Identities = 492/748 (66%), Gaps = 22/748 (3%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| |||| |||||||| || ||||| ||| || || ||||| || | Sbjct 2373448 ATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCAATG 2373507 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 ||| ||||| | || || || | ||| || | || ||| ||| || | Sbjct 2373508 AGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCACTGAGGATT 2373567 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||||| | | ||||| |||| | || ||| |||| | ||| ||| Sbjct 2373568 ATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCA 2373627 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 ||||| || ||||| || || | || || || | ||||| ||||| | || || Sbjct 2373628 AAGTCACAGTGGAAACCCTCATCCC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 2373686 Query 93157 TAACAGTCCTCGTTTCTTG-AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | |||||||| ||| || ||||| ||||| || ||||| |||||||| || || | Sbjct 2373687 CATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGATCC 2373746 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| || ||||| |||| | |||||| | | | | | ||| || ||| Sbjct 2373747 CTTCCACTGCCGCAAAAGCCAGGACACGTTCTCCTAG----GGAGCCTCTCTG-TG-TCC 2373800 Query 93276 ATTTT----AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 | | || ||||| || || || ||||| | |||||| | |||||| ||||| || Sbjct 2373801 AATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTG 2373860 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || |||| || | | | | |||| |||| ||||| | | ||| |||||| Sbjct 2373861 AAGAGGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTACATT 2373920 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 ||||| || || ||| | ||| |||| || || |||||||| | ||||| |||||| Sbjct 2373921 TCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTGATC 2373980 Query 93452 TGCACTTCTTGAGAAAATCT---CTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 || |||||||| ||| || ||| || || || ||| |||| || || |||| || Sbjct 2373981 TGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTCGG-GGCG 2374039 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 || || ||||||| || ||| | | || | |||| || || || |||| Sbjct 2374040 GCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTCCCGG 2374099 Query 93569 T--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | |||| || || ||||| | ||||| ||| | ||||| || || || || || | Sbjct 2374100 TGCTGGAT--GTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGCCT 2374157 Query 93627 TTTTGTACATATCCCATATGTCTTGATA 93654 | ||||||| | ||| || || || || Sbjct 2374158 TCCTGTACATCTGCCAGATATCGTGGTA 2374185 >seq37 Length=21270769 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| ||||| || | ||| ||||||||||| || | || ||||| Sbjct 14839882 GAATCTTTAATGTAAGTATCAATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATG 14839941 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || | ||| |||||||| Sbjct 14839942 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTG 14839991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556771389037800