Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq134 93.3 4e-14 seq57 84.2 2e-11 >seq134 Length=4000202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | | || || || ||||||| | || ||| || Sbjct 2759563 AAGATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCC 2759504 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || |||| || || || || ||||| || |||||||||||| Sbjct 2759503 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGAT 2759444 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | | || ||||| || ||||| | || ||| | || | || || ||| Sbjct 2759443 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTAC 2759384 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||| ||||| || ||||| | ||| | |||||| || Sbjct 2759383 CACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGA 2759345 >seq57 Length=13814656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||| | ||||| | | || || || ||||||| || || ||| || Sbjct 7965511 AAGATGCAGGATTTCATGAAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCC 7965570 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||| || || || |||| || || || || ||||| || |||||||||||| Sbjct 7965571 TTGGATAC-GTAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGAT 7965629 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | || ||||| || ||||| | || ||| || || | || || ||| Sbjct 7965630 CAACAGAGATGGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 7965689 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| ||||| || ||||| | ||| | |||||| || | || || ||| Sbjct 7965690 AGCATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGGT 7965740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419662292237425