Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1111 140 6e-28 seq21 134 3e-26 seq13 134 3e-26 seq16 131 3e-25 seq134 127 4e-24 seq107 120 6e-22 seq255 118 2e-21 seq49 114 2e-20 seq57 104 4e-17 seq94 102 2e-16 seq96 91.5 3e-13 seq125 87.8 3e-12 >seq1111 Length=9394 Score = 140 bits (154), Expect = 6e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68240 GCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGT 68299 ||| ||||||| ||| || || ||||||||||| |||||||| || || ||||| || Sbjct 97 GCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGT 156 Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 | ||||| || | ||| || || || || || || || ||||| || || ||||| Sbjct 157 GCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCC 216 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 ||||||||| || || || || |||| ||| |||||||| | ||||| || | Sbjct 217 TTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAG 276 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| || ||||| |||||||| || || |||||||| Sbjct 277 GGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq21 Length=29177037 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||||||||| || || || Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | ||| ||||| || |||||| Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || || || | | ||| || Sbjct 16234758 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 16234817 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| ||||| || ||||| |||||||| Sbjct 16234818 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||||||||| || || || Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | ||| ||||| || |||||| Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || || || | | ||| || Sbjct 25852611 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 25852670 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| ||||| || ||||| |||||||| Sbjct 25852671 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq16 Length=30823778 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || ||| |||| |||||||||||||| || || Sbjct 1301354 CCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGAC 1301413 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || | ||| ||||| || |||||| Sbjct 1301414 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 1301473 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || || || | | || || Sbjct 1301474 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACC 1301533 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| ||||| || ||||| |||||||| Sbjct 1301534 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 >seq134 Length=4000202 Score = 127 bits (140), Expect = 4e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || |||||||| |||||||||| || || || | || | Sbjct 2759341 GAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTAC 2759400 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 ||||||||| | || || || || || || | ||| ||||| ||||||||||| |||| Sbjct 2759401 ACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTT 2759460 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || || ||||| |||||||| || || || || | | ||| || | | | Sbjct 2759461 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAG 2759520 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || ||| | ||||| || ||||| |||||||| Sbjct 2759521 TGATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq107 Length=6112886 Score = 120 bits (132), Expect = 6e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325 ||||||| ||||||||||| || || || | || |||||||| | || || || | Sbjct 2237176 TGGACTCATTTTGGATGTTGTAGTCAGACAAAGTATGTCCATCTTCAAGTTGTTTACCAG 2237117 Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 |||| || | ||||||||| || || ||||| |||||||| || || ||||| ||||||| Sbjct 2237116 CGAAGATCAATCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGA 2237057 Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 | || || | |||| | ||| || |||| ||||| || |||||| | ||||| | Sbjct 2237056 CATTTTCTATCATATCTGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCCATAAGGGTTT 2236997 Query 68446 TGACGAATATCTGCAT 68461 | | || |||||||| Sbjct 2236996 TTATGAGAATCTGCAT 2236981 >seq255 Length=264719 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| ||| ||| || ||||||||||| |||||||| || || ||||| || Sbjct 227502 AGGCGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGG 227561 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||| || || | || || || | || || || || | ||||||||| Sbjct 227562 CCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCC 227621 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || || || || ||||| ||| ||||||| | ||||| | | |||| Sbjct 227622 TTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTG 227681 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| |||||||| || || || ||||| Sbjct 227682 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq49 Length=15761451 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || || |||| || |||| ||| || ||||||||||| |||||||| || | ||||| Sbjct 14388138 CCACGTAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGG 14388197 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || | |||||||| | ||| || || || || || || | |||||||| || ||| Sbjct 14388198 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATG 14388257 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 | |||||||| || || || || ||||| | ||| ||||||| ||| | || | | Sbjct 14388258 CACTCCTTGTCCTGGATTTTGGCTTTGACAGTCTCAGTGGTGTC-ACTGGTCTCCCCCTG 14388316 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| | ||| | | |||||| || || |||||||| Sbjct 14388317 GAGGGTGATGGTCTCGCCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 >seq57 Length=13814656 Score = 104 bits (114), Expect = 4e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||||||| | || || || Sbjct 7965739 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGAC 7965680 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || || || || || ||| ||||| ||||||||| Sbjct 7965679 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGA 7965620 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || | || || | ||| || Sbjct 7965619 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTA-CGTATCCAAGGGTTCGACC 7965561 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||| ||||||| || | ||| |||||| Sbjct 7965560 TCGAGAGTGATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCAT 7965514 >seq94 Length=7567239 Score = 102 bits (112), Expect = 2e-16 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || |||||||| || ||||| || || || || || | |||||||| | Sbjct 6929610 CAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCA 6929669 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || ||||| || || ||||| || || ||||||||||| || || | Sbjct 6929670 GCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGA 6929729 Query 68374 TCTTTGCCTTGAC 68386 |||| ||||| || Sbjct 6929730 TCTTGGCCTTCAC 6929742 >seq96 Length=7287561 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 |||| | ||||| |||| || || |||||||||| |||||||| | | ||||| Sbjct 3530321 CCGCAGAAGCGCAGCACCAGATGCAGGGTGGACTCTTCCTGGATGTTGTGGTTCGAGAGG 3530380 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || | ||| | || | ||| || || || || || || | || ||||| || | ||| Sbjct 3530381 GTGCGGCCACCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATG 3530440 Query 68358 CCTTCCTTGTCTTGAATCTTT-GCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTT 68415 ||||||||||| || || ||| || |||| ||| | ||||| |||| ||||| | Sbjct 3530441 CCTTCCTTGTCCTGGATTTTTGGCTTTGATATTCTCCAATGTGTC-ACTGAGCTCTACCT 3530499 Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| | || || | |||||||| || || |||||||| Sbjct 3530500 TGAGGGGGATGG-TCTTGCCATCAGGGTCTTCACAAAGATCTGCAT 3530544 >seq125 Length=4531708 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 268691 ACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCACG 268750 |||| ||| |||||||||||||||||||| || ||||| || ||||| | | | | Sbjct 1635432 ACCTTGACGTGGCTCTGGGCGCCCAGGTTGTAGACCTCCGAGGGCTTGACTTCGTTGATG 1635491 Query 268751 ATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||||||||||| || |||||||||||| |||||||||| Sbjct 1635492 ATCTTCACGAGGCAGGTGCTGTCGGTGAGGTCCCCGTAGTGCA 1635534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921474422003400