Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq21 118 9e-22 seq13 118 9e-22 seq16 100 2e-16 seq107 98.7 8e-16 seq134 96.9 3e-15 seq39 96.9 3e-15 seq57 93.3 4e-14 seq69 91.5 1e-13 seq29 87.8 2e-12 >seq21 Length=29177037 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||||||||| | ||| | || || || ||||| |||||||| || Sbjct 16234637 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 16234696 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||||||||||||||||||| |||| | | |||||| || || || Sbjct 16234697 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 16234756 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| | || || | || |||||| Sbjct 16234757 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 16234816 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| || ||||||||||| Sbjct 16234817 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||||||||| | ||| | || || || ||||| |||||||| || Sbjct 25852490 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 25852549 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||||||||||||||||||| |||| | | |||||| || || || Sbjct 25852550 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 25852609 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| | || || | || |||||| Sbjct 25852610 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 25852669 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| || ||||||||||| Sbjct 25852670 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq16 Length=30823778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || |||||||| | ||| | || | || ||||| ||||| || || Sbjct 1301353 ACCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGA 1301412 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||||||||||||||||||| |||| | | |||||| || || || Sbjct 1301413 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 1301472 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| | || || | || || ||| Sbjct 1301473 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGAC 1301532 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| || ||||||||||| Sbjct 1301533 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 >seq107 Length=6112886 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAA-ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 ||| || || |||||||||| | | ||| | | || || ||||| |||||||| || Sbjct 2237209 ACCACCCCGAAGTCTCAAAAATGAGATGAAGAATGGACTCATTTTGGATGTTGTAGTCAG 2237150 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||| | |||||||||||||||||||||| |||| | | ||||| || |||| Sbjct 2237149 ACAAAGTATGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGTTGATCAGGAG 2237090 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| || || ||||| || | | ||| | | || | || ||||| Sbjct 2237089 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCATATCTGAGGGTTCGA 2237030 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || | || ||||||| | ||||||||| Sbjct 2237029 CCTCCAGAGTGATAGTCTTTCCCATAAGGGTTTTTATGAGAATCTGCAT 2236981 >seq134 Length=4000202 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||||||| | ||| | || || || ||||| |||| ||| || || ||||| Sbjct 2759343 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACAC 2759402 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||||||||||||||||||| |||| | | |||||| || || ||||| ||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || ||||| || | | ||| | || || | || |||||| | | || Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || | || ||||| || ||||||||||| Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq39 Length=20300788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||||||||| | ||| | || || || ||||| |||||||| || Sbjct 4804633 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 4804574 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||||||||||||||||||||| |||| | | |||||| || || || Sbjct 4804573 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 4804514 Query 114275 AATGCCTT 114282 ||| |||| Sbjct 4804513 AATTCCTT 4804506 >seq57 Length=13814656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || || ||||||||||| | ||| | || || || ||||| ||| |||| || Sbjct 7965741 TACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAG 7965682 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||||| ||||||||||||||||||||| |||| | |||||| || || | Sbjct 7965681 ACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTG 7965622 Query 114274 GAATGCCTTCTTTGTC 114289 |||| ||||| || || Sbjct 7965621 GAATTCCTTCCTTATC 7965606 >seq69 Length=11345371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||||||||| | ||| | || || || |||| |||||||| || Sbjct 5552187 ACCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGA 5552128 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||||||||||||||||||||| | || | | |||||| || || | Sbjct 5552127 CAAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTG 5552068 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||||||| || | ||| || | | ||| | || || | || |||||| Sbjct 5552067 AATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGAC 5552008 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || | || ||||| ||||| |||| ||| Sbjct 5552007 CTCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACAT 5551960 >seq29 Length=25414214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/240 (68%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAA-ATGTATCGTAGATTCTTTTTGAATGTTGT------ 114207 ||| || || ||||||||||| | ||| | || || |||||||| ||||||| Sbjct 3398942 ACCACCCCGAAGTCTCAAAACAGAGATGAAGAGTGGACTCTTTTTGGATGTTGTTTGGAT 3399001 Query 114208 -----AATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTG 114262 | || || |||||| ||||||||||||||||||||| |||| | | || Sbjct 3399002 ATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTA 3399061 Query 114263 TTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 |||||| | ||||| ||||| || || ||||| || | | ||| | || || Sbjct 3399062 TTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATC 3399121 Query 114323 GGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || ||| || | || | || || || || || ||||| |||||||||||||| Sbjct 3399122 TGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 3399181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420068628616140