Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21 158 3e-33 seq13 158 3e-33 seq16 152 1e-31 seq134 123 6e-23 seq1111 122 2e-22 seq57 118 3e-21 seq39 118 3e-21 seq29 116 9e-21 seq69 113 1e-19 seq107 111 4e-19 seq255 107 5e-18 seq4 100 7e-16 seq100 84.2 5e-11 >seq21 Length=29177037 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | |||||||||| ||| || |||||||| || ||||| | Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| || || ||||||| | ||||||| | ||| Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 16234758 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 16234817 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 16234818 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | |||||||||| ||| || |||||||| || ||||| | Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| || || ||||||| | ||||||| | ||| Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 25852611 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 25852670 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 25852671 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq16 Length=30823778 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || | |||||||||| ||| || |||||||| |||||||| | Sbjct 1301354 CCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGAC 1301413 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| || || ||||||| | ||||||| | ||| Sbjct 1301414 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 1301473 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | || || Sbjct 1301474 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACC 1301533 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 1301534 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 >seq134 Length=4000202 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | |||||||||| ||| || |||||||| | ||||| | | || | Sbjct 2759343 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACAC 2759402 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | |||||| || || ||||||| | ||||||| ||| |||||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || |||||||| | ||| | ||| || | ||| ||| Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| | || || || ||||| |||||||| Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq1111 Length=9394 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 288252 GCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGT 288311 |||||| | || | ||||| | ||| ||||| ||||| || ||||| | ||| || Sbjct 97 GCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGT 156 Query 288312 GCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCC 288371 ||| || || || | ||||| || || || |||||| |||| || ||||| || Sbjct 157 GCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCC 216 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| || ||||||||||| ||||| | || || || | || || | ||||| ||||| Sbjct 217 TTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAG 276 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 277 GGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq57 Length=13814656 Score = 118 bits (130), Expect = 3e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | |||||||||| ||| || |||||||| | ||||| | Sbjct 7965739 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGAC 7965680 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| || || |||||| | ||||||| ||| Sbjct 7965679 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGA 7965620 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || ||||||| | ||| | ||| || Sbjct 7965619 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTA-CGTATCCAAGGGTTCGACC 7965561 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| | || || || | ||| |||||| Sbjct 7965560 TCGAGAGTGATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCAT 7965514 >seq39 Length=20300788 Score = 118 bits (130), Expect = 3e-21 Identities = 171/246 (70%), Gaps = 19/246 (8%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | |||||||||| ||| || |||||||| || ||||| | Sbjct 4804632 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 4804573 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | |||||| || || ||||||| | ||||||| | ||| Sbjct 4804572 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 4804513 Query 288367 ATTCCTT-------------------CTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 ||||||| | ||||||||||| || || || || |||||||| Sbjct 4804512 ATTCCTTTAGGAAAAGAAAAAACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTAT 4804453 Query 288408 AGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 | ||| | ||| || ||||| ||||| |||||||| || || || || ||||| || Sbjct 4804452 CGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAAT 4804393 Query 288468 CTGCAT 288473 |||||| Sbjct 4804392 CTGCAT 4804387 >seq29 Length=25414214 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 288287 TTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCA 288346 |||||||||| ||||| | | || ||||| ||||| | |||||| || || ||||||| Sbjct 3398995 TTTGGATATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCA 3399054 Query 288347 GACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTA 288406 | || ||| | ||| |||||||| ||||||||||| || || || || ||||||| Sbjct 3399055 ATCTCTATTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTA 3399114 Query 288407 TAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | | ||| | || || || || ||||| |||||||| || || || || || || | Sbjct 3399115 TCGTATCTGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAA 3399174 Query 288467 TCTGCAT 288473 ||||||| Sbjct 3399175 TCTGCAT 3399181 >seq69 Length=11345371 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | |||||||||| ||| || ||||||| || ||||| | Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGAC 5552127 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | | ||| ||||| | |||||| || || || |||| | ||||||| | | Sbjct 5552126 AAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGA 5552067 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 5552066 ATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACC 5552007 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| | || || || || || |||| ||| Sbjct 5552006 TCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACAT 5551960 >seq107 Length=6112886 Score = 111 bits (122), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCT-AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || ||||| || | |||||||| || || |||||||| || ||||| | Sbjct 2237208 CCACCCCGAAGTCTCAAAAATGAGATGAAGAATGGACTCATTTTGGATGTTGTAGTCAGA 2237149 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || |||| ||||| | |||||| || |||||||||| | |||||| | || Sbjct 2237148 CAAAGTATGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGTTGATCAGGAGG 2237089 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || || || || |||||||| ||| | ||| || Sbjct 2237088 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCATATCTGAGGGTTCGAC 2237029 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || | || || || | || |||||||| Sbjct 2237028 CTCCAGAGTGATAGTCTTTCCCATAAGGGTTTTTATGAGAATCTGCAT 2236981 >seq255 Length=264719 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||| | || || || | ||||| || | || Sbjct 227529 TCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGCTGTTTGCCCACAAAA 227588 Query 288343 ATCAGACGCTGTTGAGAATCTG---GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| | |||| ||||| || ||||||||||| ||||| || Sbjct 227589 ATCAGACGCTGCTG---ATCCGGCAGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGACA 227645 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | | || || | ||||| | ||| ||||| ||||| || ||||| ||||| Sbjct 227646 TTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 227705 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 227706 ACAAAGATTTGCAT 227719 >seq4 Length=51989874 Score = 100 bits (110), Expect = 7e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||||||| ||||| | | || | ||| ||||| | |||||| || || ||||||| Sbjct 38965457 TGGATATTGTAGTCAGACAAAGTACATCCATCTTCAAGTTGTTTACCAGCAAAGATCAAT 38965516 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || |||| ||| | |||||||||||||||| | || || || || |||||| | Sbjct 38965517 TTCTATTGATTGGGTGGAAATCCTTCTTTATCCTGGGTCTTGGCCTTGACATTTTCTTTC 38965576 Query 288409 GAATCGCTCGA-TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 | ||| | || ||| || ||||| ||||| |||||||| | |||||||| || || || Sbjct 38965577 GTATC-CAAGAGTTCAACCTCGAGAGTGATAGTCTTCCCCATAAGAGTCTTCACAAAAAT 38965635 Query 288468 CT 288469 || Sbjct 38965636 CT 38965637 >seq100 Length=6927380 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| || || || || | || || | ||||| ||| Sbjct 2821808 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCG 2821867 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 2821868 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2821911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179460256533910