Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1111 89.7 5e-13 seq21 87.8 2e-12 seq13 87.8 2e-12 seq119 84.2 2e-11 >seq1111 Length=9394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| | || || ||||| || ||||| || | | Sbjct 125 GACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 184 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || ||| |||| |||||||| || || ||||| ||||| |||||| ||| | Sbjct 185 AAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGATA 244 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||||| || | || || || ||||| || || Sbjct 245 TTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 304 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 305 ACAAAGATCTGCAT 318 >seq21 Length=29177037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| | ||| | | ||||||||||| ||||||||||| || |||||| || Sbjct 16234652 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 16234711 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||||||||| | | |||| | | |||||| || || || || ||||| || || Sbjct 16234712 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 16234771 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | || || | | || ||||||| || | || Sbjct 16234772 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 16234831 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||| || ||||||||||| Sbjct 16234832 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| | ||| | | ||||||||||| ||||||||||| || |||||| || Sbjct 25852505 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 25852564 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||||||||| | | |||| | | |||||| || || || || ||||| || || Sbjct 25852565 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 25852624 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | || || | | || ||||||| || | || Sbjct 25852625 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 25852684 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||| || ||||||||||| Sbjct 25852685 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq119 Length=4927305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 ||| |||||||||||||| ||| ||||| || |||||||| ||||| |||||||| | Sbjct 3051848 GCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGATTACTTTTCCGATTGCAGGA 3051789 Query 153719 GTCTTTGAAGAGCATGTACGG 153739 |||||| |||||||||| || Sbjct 3051788 ATCTTTGTAGAGCATGTAGGG 3051768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496182718868400