Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 seq13 104 2e-17 seq134 96.9 2e-15 seq16 86.0 4e-12 seq1111 84.2 2e-11 >seq21 Length=29177037 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| | |||||| || || || ||||| |||||||| || Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | |||||| ||||| | ||||| | |||||| || |||| Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| ||||||| ||||| ||| || Sbjct 16234758 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 16234817 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 16234818 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| | |||||| || || || ||||| |||||||| || Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | |||||| ||||| | ||||| | |||||| || |||| Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| ||||||| ||||| ||| || Sbjct 25852611 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 25852670 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 25852671 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 >seq134 Length=4000202 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTC 15018 ||| ||||| | |||||| || || || ||||| |||| ||| || ||| || | | | Sbjct 2759345 TCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTC--TGACAAAGTACAC 2759402 Query 15019 GCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCC 15078 | ||||| | |||||| ||||| | ||||| | |||||| ||| ||||||||||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 15079 TTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTA 15138 || || || ||| || ||| ||||||| ||||| ||| || | | || Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 15139 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || | || ||||| || ||||| ||||| || Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq16 Length=30823778 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||||| | |||||| || | || ||||| ||||| || || Sbjct 1301354 CCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGAC 1301413 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | |||||| ||||| | ||||| | |||||| || |||| Sbjct 1301414 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 1301473 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| ||||||| ||||| || || Sbjct 1301474 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACC 1301533 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 1301534 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 >seq1111 Length=9394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| || ||| | | | || || | || Sbjct 115 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTG 174 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| || | |||| | |||| ||||| || || ||||||||||| ||||| Sbjct 175 TTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATTTT 234 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| | | | || || || || || ||||| || | ||| ||||| || || || Sbjct 235 GGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCCGT 294 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || ||||| Sbjct 295 CAGGGTCTTCACAAAGATCTGCAT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357336050840825