Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21 102 8e-17 seq13 102 8e-17 seq16 84.2 2e-11 >seq21 Length=29177037 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | || ||| || | ||| | || ||||| ||||| || ||||| || Sbjct 16234634 TGCACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 16234693 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| || || ||||| ||||| ||||||||| ||| ||||| || Sbjct 16234694 AGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGG 16234753 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || ||||| ||| ||| || ||||| | ||| | || |||| || Sbjct 16234754 TGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTC 16234813 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || | || || || || || ||||| || ||||||||||| Sbjct 16234814 GACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | || ||| || | ||| | || ||||| ||||| || ||||| || Sbjct 25852487 TGCACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 25852546 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| || || ||||| ||||| ||||||||| ||| ||||| || Sbjct 25852547 AGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGG 25852606 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || ||||| ||| ||| || ||||| | ||| | || |||| || Sbjct 25852607 TGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTC 25852666 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || | || || || || || ||||| || ||||||||||| Sbjct 25852667 GACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq16 Length=30823778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | | ||| || | ||| | || |||| ||||| || || || || Sbjct 1301350 TGCACCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTC 1301409 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| || || ||||| ||||| ||||||||| ||| ||||| || Sbjct 1301410 AGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGG 1301469 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || ||||| ||| ||| || ||||| | ||| | || |||| | Sbjct 1301470 TGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTT 1301529 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || | || || || || || ||||| || ||||||||||| Sbjct 1301530 GACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475424452402800