Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq67 170 3e-37 >seq67 Length=11548157 Score = 170 bits (188), Expect = 3e-37 Identities = 232/324 (72%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 8852 GCCTTGAGGAGTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTG 8911 |||||| || | |||||| || | ||| || | | ||| || ||||| || ||| Sbjct 1432089 GCCTTGGGGGGGGCCGCGTCCTGCACGCTGAAGGCCGTGAGCGGGCAGCCCTTGACGTTG 1432030 Query 8912 GCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCG 8971 || || |||||||| | || ||||| || ||||| || || || || || ||| Sbjct 1432029 TGGCAGATCAGGGACTGGAGGGAGGCGGTGTTGACGATCCGGAAGCCCACCTCGCCCCCG 1431970 Query 8972 AAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAG 9031 |||||||| || ||||||||| | || ||||||||| ||| ||||||| || |||| | Sbjct 1431969 AAGGTGCTCGGCTTCCAGTACTCGGGCGAGCAGATGGGGTTGCCCATGAGGCCCTTCAGG 1431910 Query 9032 GAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTT 9091 || || || ||||||||||| | ||| |||| ||||||||||| | || || || || Sbjct 1431909 GAGAAGGGGGCCCCCAGCTCCACCATGGTCTCCCCGAAGATGGCGTCCGGCCGGGGCTTC 1431850 Query 9092 TCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAAC 9151 || || | || | | | ||| || || | || |||| ||| || || || || |||| | Sbjct 1431849 TCCACCAGGAGGGCGGGGTACAGCTCCATGGCGTCGATGTCACCGTACAGCGCCTCCAGC 1431790 Query 9152 TCGGCAGCTATCTCCTTCTCACCT 9175 || | || ||||||||||| ||| Sbjct 1431789 TCCGAGGCCATCTCCTTCTCCCCT 1431766 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || || | ||||||||| ||||| || ||||| || || || || || || | Sbjct 1428456 TGGTCTGGAAGAGCTGCTCGTCCCCCCACTCGGGGTGCTCCTGCCGCAGCACGTCACACA 1428397 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 ||| |||||| || | ||||| ||||||||||||||||| | || ||||| | || | Sbjct 1428396 CCCGGTTGTGCTCCCGAAGCCAGATGGTGGCGTACATCATGAGCCCTGGCACCATCCCGA 1428337 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 ||| || | ||||| ||||||||||| | || ||||| | ||||| || | ||| Sbjct 1428336 ACAGCTCCTGGCCCACGGCAAAGCGCAGGTGCTCCGGCACGTGGGGCGGGTAGATCATGG 1428277 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 | |||| ||||| ||||||||| || ||||| || ||||| || | |||| Sbjct 1428276 CCGCCTGCGTCTCCCCGACGGTGGGCGGGTACATCTCCCCGTCGATGATCTGA 1428224 Score = 134 bits (148), Expect = 2e-26 Identities = 209/296 (71%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 9425 CACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCT 9484 |||| | || ||||| ||||| || |||| || || || || ||| | |||||| Sbjct 1429518 CACTCACCCTGCCGGCGATCTGGCTGCTGAAGGACTCCACGAACCGGGTGAGGCCGTGCC 1429459 Query 9485 TGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGC 9544 | |||| ||| |||||||| | ||| || | ||| | |||| | | || | ||| Sbjct 1429458 GCAGCAGGACGGAGTTGTTGTAGAGGAACTGCTGGTAGCTGTACTCCTGGCCGTCGATGA 1429399 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 | || ||||||| ||| | |||||| |||| ||||| |||||||||| || || | Sbjct 1429398 GGAAGCTGTCAGGCAGCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGCGATGC 1429339 Query 9605 GGTTCTGGTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 |||||||||||| ||| || | | |||||| | ||||||||| || | |||| |||| Sbjct 1429338 GGTTCTGGTACTGGAACTGCTG-CCTGAACAGCAGCTCCGGGTCGAACTTCAGCTTGAAG 1429280 Query 9664 TGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||| ||||| || ||||| || || | ||| | || || |||||||| || Sbjct 1429279 TTGTAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACGATCTTGATGGTTTCTCC 1429224 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 || |||||||| ||||| || | ||||| || || || ||| || ||| | || Sbjct 1427334 CTCACCCCATGGCCCAAGCCCTTGGTGAAGGCTGGCCCCCGCTTATGGTCCGTCTTGAAG 1427275 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || ||||| || ||||| || |||| || || ||||||| |||||||||||| || ||| Sbjct 1427274 AACTGGTGGGTGAAGTGCTGGGCGAAGAAGGCAAACATCATGTTGGTGCCCTGCGGGTCG 1427215 Query 10242 GGGATAAAGGTCCTCC 10257 ||||| || |||||| Sbjct 1427214 GGGATGAACTTCCTCC 1427199 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 ||||| || ||||||||||| |||||||| || ||||||||||| ||| |||||| || Sbjct 1427976 ACCTGGTATTTCATCTTCCCGTCCTTGAAAAGGCGCAGCTTATGTTGCCGCTCCAAAGTC 1427917 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTGCGAGAGA 10059 |||||||||| ||| | | || |||| | ||||| Sbjct 1427916 TCGCCGTAGACATGATTTAAGTCCACCTACAAGAGA 1427881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723611796423000