Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq61 82.4 9e-11 >seq61 Length=12918418 Score = 82.4 bits (90), Expect = 9e-11 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||||| |||||| || | | || |||||||| || || || || Sbjct 2373624 AGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 2373683 Query 127579 TGGCATGAGACC-CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 ||||| || || || || |||| |||||| |||| ||| |||||||| ||||||| Sbjct 2373684 AGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGA 2373743 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAA 127697 |||| ||||| ||| || || | | ||| || | | ||||| || ||| || | Sbjct 2373744 TCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCCTAGGGAGC--CTCTCTGTGTCCA 2373801 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 | | | || ||||| | ||||| |||| || ||| || | || | || || | | Sbjct 2373802 ATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGA 2373861 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 |||| | | | || || | |||||| |||| |||| |||| Sbjct 2373862 AGAGGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAG 2373907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613408693750200