Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1111 122 1e-22 seq255 100 3e-16 seq46 87.8 2e-12 seq121 86.0 7e-12 seq94 84.2 2e-11 seq96 82.4 9e-11 >seq1111 Length=9394 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| | ||||||||| || ||| || ||||| |||||||| || || ||||| | Sbjct 104 CGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCA 163 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| || || |||| |||||||||| | ||| | || |||||| Sbjct 164 TCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTG 223 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||| || |||| || | | ||||| || | || || || | |||||| Sbjct 224 TCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATG 283 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || |||||||| ||||| Sbjct 284 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq255 Length=264719 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| | |||| |||| || ||| || ||||| |||||||| || || ||| | | Sbjct 227505 CGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCA 227564 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| | || |||| |||||||| || | | | | || |||||| Sbjct 227565 TCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTG 227624 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||| || |||| || | ||||| || | || || | | |||||| Sbjct 227625 TCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATG 227684 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || |||||||||||||| Sbjct 227685 GTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq46 Length=16750451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| | || || |||||||||||||| || Sbjct 1815883 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 1815824 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| | ||||||||||| || | || |||||| || Sbjct 1815823 ATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 1815786 >seq121 Length=4665274 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||| || || ||||| | || || |||||||||||||| || Sbjct 2221419 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 2221478 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| | ||||||||| | || | ||||||||| ||| |||||| ||||| Sbjct 2221479 ATCAGCCTCTGCTGGTCAGGGGGGATGCTCTCCTTATCCTGGATCTTGGCCTTGA 2221533 >seq94 Length=7567239 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| || ||||||| || ||| || || || |||||||| || Sbjct 6929590 GCCACCCCTCAGACGCAGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGA 6929649 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||||||||||| || || | | ||||||||| | || Sbjct 6929650 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 6929709 Query 46486 CACGCTCTCCTTGTCCATGATCTT 46509 | || ||||| ||| |||||| Sbjct 6929710 GATGCCTTCCTTATCCTGGATCTT 6929733 >seq96 Length=7287561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| ||||||||||| || ||| | ||||| |||| || || || ||||| Sbjct 3530327 AAGCGCAGCACCAGATGCAGGGTGGACTCTTCCTGGATGTTGTGGTTCGAGAGGGTGCGG 3530386 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | | || ||||| ||||| || || |||| ||||| ||||| | | | | || ||| Sbjct 3530387 CCACCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATGCCTTCC 3530446 Query 46496 TTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGT 46554 |||||| ||| || | |||| || ||| ||||| || || || | | | Sbjct 3530447 TTGTCCTGGATTTTTGGCTTTGATATTCTCCAATGTGTCACTGAGCTCTACCTTGAGGGG 3530506 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||| || |||| || || |||||||| ||||| Sbjct 3530507 GATGGTCTTG-CCATCAGGGTCTTCACAAAGATCTGCAT 3530544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565147643909400