Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq61 230 2e-55 seq1111 143 3e-29 seq255 129 6e-25 seq46 107 2e-18 seq96 104 2e-17 seq49 100 3e-16 seq121 93.3 4e-14 seq37 93.3 4e-14 seq94 89.7 5e-13 seq100 84.2 2e-11 >seq61 Length=12918418 Score = 230 bits (254), Expect = 2e-55 Identities = 399/573 (70%), Gaps = 23/573 (4%) Strand=Plus/Plus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 ||| |||||||||| |||||||||||| || || || ||||| |||||| ||| ||||| Sbjct 2373606 ATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTC 2373665 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG-AGCCAAAATATGGCGGCGA 132997 ||| || || | ||| ||||| || || | |||||| ||||| ||||| | || | Sbjct 2373666 ATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAA 2373725 Query 132998 AACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG 133057 | ||| |||||||||| || || || ||||| ||||||| | || || || | | Sbjct 2373726 ACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCCTAGGG 2373785 Query 133058 TGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA 133117 | || || || | |||| | || ||||| || ||||| | ||||| || |||| Sbjct 2373786 AGCCT-CTCTGTGTCCAATCCC-CACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCA 2373843 Query 133118 TCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCAC-------GTAG 133170 | ||||| || || || || | | |||| ||||| | ||| ||| Sbjct 2373844 TTGTTTCAATAGCATTGAAGA----GGTTTTCCCTTCCTTTG---GCATCTTTATTGTAA 2373896 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || || ||||| |||||||| |||||| ||| ||| |||| |||||||||| Sbjct 2373897 GTATCAGTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCA 2373956 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAAC----GCTCGACCAGATT 133286 || || || || || || | ||| |||||||| || |||| |||||||||| || Sbjct 2373957 TAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTG-GCTAAACCTTAGCTCGACCAGGTT 2374015 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || |||||||||||||| ||||||||| || ||||| | |||| |||| | | Sbjct 2374016 CTCAGTGACGATGCCGTCGG-GGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCT 2374074 Query 133347 CTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||||| | || | | |||| || | |||||||||| ||| |||| |||||| | Sbjct 2374075 CTCGTCGGGCTTGAGGGCGTCCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGC 2374134 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||| || ||||||||||| || ||||||| Sbjct 2374135 CGTCCAGAAGGACGCCTCGGCCTTCCTGTACAT 2374167 >seq1111 Length=9394 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| |||| || ||| ||| Sbjct 318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 259 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | | | | |||| ||||||| ||||| || || || ||||||| |||| Sbjct 258 GACACCATTGAGAATATCAAAGCCAAAATCCAGGACAAGGAAGGCAT-CCCGCCGGACCA 200 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || |||| ||||||||||||||||| || | ||||||||| |||||||| Sbjct 199 GCAGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 140 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || |||||| ||| |||||| Sbjct 139 CATCCAGAAAGAGTCCACCCTGCATCTGGCGCTGCG 104 >seq255 Length=264719 Score = 129 bits (142), Expect = 6e-25 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || |||||||| ||||||||| || | || ||||||| Sbjct 227719 ATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTAGAGGCCAGT 227660 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | || || | | |||| ||||||| ||||| || || || || |||| | | Sbjct 227659 GACACCACTGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAAGGCAT-CCTGCCGGATC 227602 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| | ||||||||||||||| || | | ||||||| ||||||| Sbjct 227601 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCACACCCTCTCAGACTACA 227542 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | || ||||| ||| |||||| Sbjct 227541 ACATCCAGAAAGAGTCCACCCTGCACCTGGGGCTGCG 227505 >seq46 Length=16750451 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || || ||||| || ||| ||||||| ||| |||| || | || ||||| |||||||| Sbjct 1815786 GATAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAA 1815845 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| |||||| | || ||||| ||||| ||| Sbjct 1815846 GATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTG 1815905 Query 38457 CGTTTGAGAGGCGGCCG 38473 || |||| || || || Sbjct 1815906 CGCCTGAGGGGTGGGCG 1815922 >seq96 Length=7287561 Score = 104 bits (114), Expect = 2e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || | || ||| |||||| || || | || ||| || Sbjct 3530544 ATGCAGATCTTTGTGAAGACCCTGATGG-CAAGACCATCCCCCTCAAGGTAGAGCTCAGT 3530486 Query 38304 GACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | | |||| |||||||| ||||| || || || || ||| |||| Sbjct 3530485 GACACATTGGAGAATATCAAAGCCAAAAATCCAGGACAAGGAAGGCAT-CCTGCCAGACC 3530427 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||||||||||||||||| | | ||||||||| || ||| Sbjct 3530426 ATCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGGTGGCCGCACCCTCTCGAACCACA 3530367 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||||||| | || | || |||||| |||||||||| || Sbjct 3530366 ACATCCAGGAAGAGTCCACCCTGCATCTGGTGCTGCGCTT 3530327 >seq49 Length=15761451 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | | |||| | ||||||||| || | | ||| ||| Sbjct 14388361 ATGCAGATCTTTGTGAAGACCTTGATGGGCGAGACCATCACCCTCCAGGGGGAGACCAGT 14388302 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | |||| ||||||| ||||| ||| | || || ||||||| Sbjct 14388301 GACACCACTGAGACTGTCAAAGCCAAAATCCAGGACAAGGAGTGCATCCCGCCCGACCAG 14388242 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || || | || |||||||||||||| || | ||||||||| |||||||| Sbjct 14388241 TAGCATCTGATGTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCGCACTACAAC 14388182 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| || || | || ||||| |||||||| Sbjct 14388181 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTG 14388149 >seq121 Length=4665274 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||| | || ||| | ||||| ||| |||| || | || ||||| Sbjct 2221525 AAGATCCAGGATAAGGAGAGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAG 2221466 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| |||||||||||||| || ||| | || ||||| Sbjct 2221465 CAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCCACTCTGCAC 2221406 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGCCG 38473 ||||| ||||| |||| || || || Sbjct 2221405 TTGGTCCTGCGCCTGAGGGGTGGGCG 2221380 >seq37 Length=21270769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || || |||||||||||||||||||||||||| |||||||| | |||| ||| Sbjct 14840273 ACCAGGTTCTCATTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGGATGTGCGATATG 14840332 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||||| | | || | | ||||||| | |||||||||| ||||||||| Sbjct 14840333 AAGTACTTCTCGTCGGCCTTGAGGGCGTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACC 14840392 Query 133399 T 133399 | Sbjct 14840393 T 14840393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| ||| ||||| ||| || || | ||| ||||| || || | ||||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| ||||| | || ||| ||| |||||||||| || || || |||||||||| Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 133037 CCAC 133040 |||| Sbjct 14837933 CCAC 14837936 >seq94 Length=7567239 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || || || || ||| | ||||| ||| ||||||| | || ||||| Sbjct 6929733 AAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 6929674 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || ||||||||||| || || || |||| |||||| Sbjct 6929673 CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATTCAGAAAGAGTCGACCCTGCAT 6929614 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 | || |||||| |||| || ||| || Sbjct 6929613 CTTGTCCTGCGTCTGAGGGGTGGCTGC 6929587 >seq100 Length=6927380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||||||| |||| ||||| || |||| ||||||||||||||||| || | ||||||| Sbjct 2821702 TCCCGCCGGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCC 2821643 Query 38410 TCAACGACTACAACATCCA-AAAGG 38433 || |||||||||||||| ||||| Sbjct 2821642 TCTCGGACTACAACATCCAGAAAGG 2821618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500092491004800