Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14 109 4e-18 seq34 93.3 3e-13 seq18 91.5 1e-12 >seq14 Length=32092909 Score = 109 bits (120), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| ||||| |||| ||||||||||||||| ||||| || || | | ||||| |||| Sbjct 9397828 CAAG-CCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATCCGAAGTACATTGAGAC 9397886 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 ||||||| |||| |||||||| || || || | ||| || || || || || ||||||| Sbjct 9397887 CAGCAATGGTTCCAGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGAA 9397946 Query 518292 CAGTAATAACGGCAT 518306 | |||| ||| |||| Sbjct 9397947 CTGTAACAACAGCAT 9397961 >seq34 Length=23251817 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| || ||||| || || ||||| || ||| | || || ||| | Sbjct 20719986 TGTACACTGATCCTGACTGAAGGAGACTCGGCCAAAACTTTGGCTGTTTCAGGGCTTGGT 20719927 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||||||||| | ||||| ||||||||||||||||||||| | | |||||| | Sbjct 20719926 GTGGTTGGAAGAGACAAATATGGGGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 20719867 Query 635561 GATGCTAGTCCTAA 635574 || ||| || ||| Sbjct 20719866 GAAGCTTCTCATAA 20719853 >seq18 Length=30093284 Score = 91.5 bits (100), Expect = 1e-12 Identities = 178/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 || |||| | |||||| | |||| | ||| | || |||||||||||||| | || | Sbjct 10524083 TGATCATGAAACCACCAGAAGTTTA-ATGCCATGGGAGAGAGGAGTGACATCCAACAGAA 10524025 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || ||||| |||||| | | ||| |||||| ||||| |||| || |||| Sbjct 10524024 GCAGATCTTGAACATTTTCAGACTTGTCTCCAGAAAGAATGGCTGCCTGAACAGTTGCAC 10523965 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 ||||||| ||||| |||||||| || | | | || |||| ||| | ||||| || Sbjct 10523964 CATATGCTACAGCCTCATCAGGGTTGATGCTCTTGTTCAGTTCTTTCCTGTTGAAGCTAT 10523905 Query 517674 TTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 |||||||| ||| | ||| |||||||| | || || || || | ||||| Sbjct 10523904 CCTGAAGAAGTT-TCTGAATCTTGGGAATACGGGTAGAACCACCCACCAGGACAATAATG 10523846 Query 517733 TGCACCTGTGATTTATCCA 517751 || | ||| ||||| |||| Sbjct 10523845 TGGATCTGGGATTTGTCCA 10523827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780184988788570