Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq21 132 1e-25 seq13 132 1e-25 seq134 123 6e-23 seq69 105 1e-17 seq57 102 2e-16 seq29 102 2e-16 seq1111 98.7 2e-15 seq5 98.7 2e-15 seq39 96.9 8e-15 seq4 91.5 3e-13 seq255 89.7 1e-12 >seq21 Length=29177037 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| || |||||||||||||| ||||| || ||||| || | | ||| | Sbjct 16234647 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 16234706 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| | || ||||| || || ||||| ||||| Sbjct 16234707 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 16234766 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || |||||| || || || || ||||| ||| || || || || Sbjct 16234767 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 16234826 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 16234827 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| || |||||||||||||| ||||| || ||||| || | | ||| | Sbjct 25852500 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 25852559 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| | || ||||| || || ||||| ||||| Sbjct 25852560 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 25852619 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || |||||| || || || || ||||| ||| || || || || Sbjct 25852620 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 25852679 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 25852680 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq134 Length=4000202 Score = 123 bits (136), Expect = 6e-23 Identities = 162/223 (73%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 194919 TCTGA-GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAG 194977 ||||| |||||||||| || |||||||||||||| ||||| || | ||| || | | || Sbjct 2759338 TCTGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAG 2759397 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||||||| || || ||||| || ||||| | || ||||| || || ||||| | Sbjct 2759398 TACACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTC 2759457 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| || || || || || |||||| || || || || ||||| ||| || | | Sbjct 2759458 CTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGA 2759517 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||||| || | | ||||| ||||| | ||||| Sbjct 2759518 GAGTGATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq69 Length=11345371 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| || |||||||||||||| |||| || ||||| || | | || | Sbjct 5552177 AGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGACAAAGCACAT 5552118 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || || || | || ||||| || || |||| |||||| Sbjct 5552117 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGAATTCCTTCT 5552058 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || |||||| || || || || ||||| ||| || || || || Sbjct 5552057 TTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTG 5551998 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACA 195133 | ||||| || | | ||||| || |||| Sbjct 5551997 ATAGTCTTCCCCGAAAGGGTTTTCACAAACA 5551967 >seq57 Length=13814656 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| || |||||||||||||| ||||| || |||| || | | ||| | Sbjct 7965730 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGT 7965671 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 7965670 CCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGAATTCCTTCC 7965611 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || |||||| || || | || ||| | ||| || || || || Sbjct 7965610 TTATCCTGGATCTTGGCCTTGACATTTTCTA-CGTATCCAAGGGTTCGACCTCGAGAGTG 7965552 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | | ||||| | ||| | ||||| Sbjct 7965551 ATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCAT 7965514 >seq29 Length=25414214 Score = 102 bits (112), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 194923 AGTCTCAAAACA-AGGTGAAGAGTGGACTCTT-----------TTTGAATATTGTAATCG 194970 |||||||||||| || |||||||||||||||| |||| |||||||| || Sbjct 3398952 AGTCTCAAAACAGAGATGAAGAGTGGACTCTTTTTGGATGTTGTTTGGATATTGTAGTCA 3399011 Query 194971 GCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGA 195030 | | ||| | |||||||| || || ||||| || ||||| | || | |||||| | Sbjct 3399012 GACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTATTGGTCAGAT 3399071 Query 195031 GGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCC 195090 ||||| ||||| || || || || || |||||| || || || || || || || Sbjct 3399072 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCTGAGGGTTTG 3399131 Query 195091 ACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || | ||||| || || | ||||| || || | ||||| Sbjct 3399132 ACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 3399181 >seq1111 Length=9394 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || || || ||||||||||| || || ||||| || | || || | ||||| || ||| Sbjct 113 AGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGC 172 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || || || || || | || ||||| || || |||||||| ||||| || ||| Sbjct 173 TGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATT 232 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || |||| |||||||||||||| ||| || || || ||||| | ||||| Sbjct 233 TTGGCTTTGATATTCTCAATGGTGTC---ACTGGGCTCTACCTCGAGGGTGATGGTCTTG 289 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 290 CCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq5 Length=50938590 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||| || |||||||||||||| ||||| || | ||| || | || | Sbjct 5964024 AGTCTCAAAATGAGATGAAGAGTGGACTCCTTTTGGATGTAGTAGTCAGACTAAGCACGT 5963965 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || |||| || ||||| | || |||||| | |||||||| ||||| Sbjct 5963964 CCATCTTCAACTTGTTTACGAGCAAAGATCAATCTTTGTTGATTGGGAGGAATTCCTTCC 5963905 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || |||||| || || || || | ||| |||||| || || ||| Sbjct 5963904 TTTTCCTGGATCTTGGCCTTGACATTTTCTATTGTAACTGAAGGTTCCACCTCGAGAGTA 5963845 Query 195103 ACCGTCTTTCC 195113 | || ||||| Sbjct 5963844 AAAGT-TTTCC 5963835 >seq39 Length=20300788 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| || |||||||||||||| ||||| || ||||| || | | ||| | Sbjct 4804623 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 4804564 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 |||||||| || || ||||| || ||||| | || ||||| || || ||||| |||| Sbjct 4804563 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTT 4804506 >seq4 Length=51989874 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 || || |||||||| |||||||||||||| ||||| || ||||| || ||||| ||| Sbjct 2293882 AGCCTGAAAACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGGCAA-AGTATG 2293824 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||| |||| || || ||||| || |||| | || ||| || | ||||||| ||||| Sbjct 2293823 TCCAGCTTCAAGTTGTTTACCAGCAAAGACTAATCTTTGCTGACCAAGAGGAATTCCTTC 2293764 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || |||| | || || || || || || || || || || | || || Sbjct 2293763 CTTATCCTGAACCCTGGCCTCTACATTTTCTATTGTATCTGAGGGTTGAACCTTGAGAGT 2293704 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| || || | ||||| Sbjct 2293703 AATAGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 2293665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||||||| |||||||||||||| || |||||||| || | | ||| | Sbjct 38965427 AGTCTCAAAACAAGATGAAGAGTGGACTC---CTGGATATTGTAGTCAGACAAAGTACAT 38965483 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| | | | ||| | || |||| |||||| Sbjct 38965484 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATTTCTATTGATTGGGTGGAAATCCTTCT 38965543 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || |||||| || || | || ||| | ||| || || || || Sbjct 38965544 TTATCCTGGGTCTTGGCCTTGACATTTTCTTTCGTATCCAAGAGTTCAACCTCGAGAGTG 38965603 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || | | ||| || || || Sbjct 38965604 ATAGTCTTCCCCATAAGAGTCTTCACAAA 38965632 >seq255 Length=264719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || ||||||||||| || || ||||| || | || || ||||| || ||| Sbjct 227514 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGC 227573 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || | || || || || || || || || | |||||||| ||||| || ||| Sbjct 227574 TGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGATT 227633 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || ||||| |||||| ||||||| ||| || || | ||||| | ||||| Sbjct 227634 TTAGCTTTGACATTCTCAGTGGTGTC---ACTGGCCTCTACCTTGAGGGTGATGGTCTTG 227690 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | |||||| Sbjct 227691 CCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109299005332115