Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1111 127 1e-24 seq255 104 2e-17 seq49 98.7 6e-16 >seq1111 Length=9394 Score = 127 bits (140), Expect = 1e-24 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| ||| | || |||| ||||||||||| || ||||| Sbjct 128 TCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAA 187 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| |||| | || |||||||| || || ||||| || Sbjct 188 ATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGA--TAT 245 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || |||| ||| ||||| || ||||| || ||||||| Sbjct 246 TCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 305 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 306 CAAAGATCTGCAT 318 >seq255 Length=264719 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | | |||| ||||||||||| || |||| Sbjct 227529 TCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGCTGTTTGCCCACAAAA 227588 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || || | | || |||||||| || || |||||| || Sbjct 227589 ATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGAC--AT 227646 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| |||||| || | || ||| ||||| || ||||| || ||||||| Sbjct 227647 TCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 227706 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 227707 CAAAGATTTGCAT 227719 >seq49 Length=15761451 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||| ||| ||| | || |||| ||| Sbjct 14388153 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGTGCGGCCATCTTCC 14388212 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | | |||||| |||| | | ||||||||| Sbjct 14388213 AGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGTCCTGG 14388272 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | | | |||| || ||| | | || ||| ||||| | Sbjct 14388273 ATTTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGAGGGTGATGGTCTCG 14388332 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | | |||||||||||||||||||| Sbjct 14388333 CCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324582779117160