Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq61 291 9e-74 seq37 129 7e-25 seq119 109 6e-19 >seq61 Length=12918418 Score = 291 bits (322), Expect = 9e-74 Identities = 507/723 (70%), Gaps = 16/723 (2%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||||| | ||||| || ||||| || |||||||| ||||| || || || Sbjct 2373318 CATCACTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC 2373377 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| ||| ||||| || ||||||||||||| ||| | | | || |||| || Sbjct 2373378 CAGTGAGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACC 2373437 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCA--CA 18833 || || | | ||||| || | ||||||| |||||| ||| ||||| || || || Sbjct 2373438 TAGCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGT-TTCAT--TAACATGCA 2373494 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893 ||||| || || | || ||||| | || || ||||| || || |||||||| || || Sbjct 2373495 GTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAAC 2373554 Query 18894 TGCCTCTGA-TATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA 18952 | | |||| || || | ||||| | || ||| || || |||||||| | Sbjct 2373555 AG-CACTGAGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGA 2373613 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||||| || ||||| ||||| || | ||||| || || || || | |||||| |||| Sbjct 2373614 ACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAA 2373673 Query 19013 ATGTTAAACCAGGCATCAGTCCT-CttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 |||| | ||||||||||||||| |||||||| | ||||||||| || ||||| || ||| Sbjct 2373674 ATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCA 2373733 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||||| || ||||| ||||| |||||||| | | | |||||| || ||| || Sbjct 2373734 GAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCT 2373792 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | ||||| || ||||| || |||||||| || ||||| |||||||| || Sbjct 2373793 CTGTGTCCAATCC-CCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCA 2373851 Query 19192 ATAGAATTAAATAGATACATACGCTCATCT-GTATCTTTAACATATGCATCTATCAATAA 19250 |||| ||| || || | | | || | | | ||||||| || | ||| | | | Sbjct 2373852 ATAGCATTGAAGAGGT-TTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAG 2373910 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 |||||||||||| || || | ||||| | || | ||||| || || ||||| | || Sbjct 2373911 ACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGC 2373970 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTT---TCGACCAAATTTTCATTAACTATTCC 19367 |||||| ||||| ||||| | ||| ||| ||||||| || ||| | || || || Sbjct 2373971 TTCTGTGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCC 2374030 Query 19368 ATC 19370 || Sbjct 2374031 GTC 2374033 >seq37 Length=21270769 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | |||||| |||||||| | |||||||||||||||||||||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| || |||| Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 14837933 CCACGACACGTTCTCC 14837948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||||||||| ||| || || || ||| |||||||| Sbjct 14836159 TTAGAAGTCTGCATCCAAGGTAAAAGAATTGTCTG--TTGGACTTGACATCACTCCCATC 14836216 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 14836217 CTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTC 14836276 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 14836277 TCCATGAAGTCAAATGGATTTTCTAC 14836302 >seq119 Length=4927305 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| |||| |||||| || | || || || || ||||| ||||| || || Sbjct 3059024 TGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATGGAC 3058965 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | ||||| | || || Sbjct 3058964 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAACTG 3058905 Query 47448 TTTCTTACTCCATAT 47462 ||||| | |||||| Sbjct 3058904 TTTCTAATACCATAT 3058890 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| | || || | |||||| || | Sbjct 3064584 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTCGGCTCAGCAATATGGATGT 3064525 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||||| | | || Sbjct 3064524 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTGTCAGCTGCCATCTTGAGAACTGTTT 3064465 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| ||| ||||| || || ||||||| |||||| | ||| || || Sbjct 3064464 TCTGTGATATTTCCCACACGGTCTTATAAAGTTGTTTCAGGTCATCAGG 3064416 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 3033757 GTACCAGCATTGAAGAGAGTCGGAGAGGCATGTGTAAACCACTTCTCAGAAAGAAGGTTG 3033698 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 3033697 TATGTTTCAATGGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3033638 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 3033637 ATATGTTGTGGTCTTTCA 3033620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562018546405800