Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14 118 9e-21 seq21 113 4e-19 seq13 113 4e-19 seq16 109 4e-18 seq4 109 4e-18 seq134 91.5 1e-12 seq29 91.5 1e-12 seq69 89.7 4e-12 seq10 86.0 5e-11 >seq14 Length=32092909 Score = 118 bits (130), Expect = 9e-21 Identities = 108/135 (80%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || |||||||| |||||||| ||||| ||||||| Sbjct 9397961 ATGCTGTTGTTACAGTTCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGATG 9397902 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || ||||| ||||| || |||||||| || ||||||||||| Sbjct 9397901 CTGGAACCATTGCTGGTCTCAATGTACTTCGGATCATCAATGAGCCAACTGCTGCTGCTA 9397842 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 9397841 TTGCCTATGG-CTTG 9397828 Score = 87.8 bits (96), Expect = 1e-11 Identities = 229/346 (66%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | |||||||| | |||||||| || | || || || | || || || | || Sbjct 9397522 GCTGTCCGTCGTCTGCGCACTGCTTGTGAGCGTGCGAAGCGTACCCTCTCTTCCAGCACC 9397463 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| |||||| | ||||| | | ||| || || || | |||| | ||| | Sbjct 9397462 CAGGCCAGTATTGAGATTGATTCCCTGTATGAAGGCATCGACTTCTATACCTCCATTACC 9397403 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 |||| |||||||| | | ||||||| || || || | || |||||||| Sbjct 9397402 CGGGCTCGGTTTGAAGAGTTGAATGCTGATCTGTTCCGAGGCACTCTGGACCCAGTAGAG 9397343 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | | | | ||| | ||| | || |||||| | | || || ||||| || || ||| Sbjct 9397342 AAGGCCCTTCGCGATGCCAAGTTGGACAAATCCCAGATCCACGATATTGTCCTGGTGGGT 9397283 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAA 552192 || ||||| | ||||| || |||| |||| | || || || || |||||| ||| Sbjct 9397282 GGCTCTACCCGTATTCCCAAGATTCA-GAAACTTCTTCAGGATTTCTT-CAATGGAAAAG 9397225 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 || | || | || | || || ||||||||||| || |||||||| Sbjct 9397224 AACTCAACAAGAGCATCAACCCTGATGAGGCTGTAGCATATGGTGC 9397179 >seq21 Length=29177037 Score = 113 bits (124), Expect = 4e-19 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| ||||| || ||||| |||| | ||| | | ||||| Sbjct 16234656 ACGAGATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCAGACAAAGTACGTCCATCTT 16234713 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 |||||||||| || ||||| || | ||| || |||||||| ||||||||||| ||||| | Sbjct 16234714 CAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCT 16234773 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || || || || || ||||| || || | || |||||||| | ||| Sbjct 16234774 GGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCG-AC-CTCGAGAGTGATAGT 16234831 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| |||||||| ||||| Sbjct 16234832 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 113 bits (124), Expect = 4e-19 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| ||||| || ||||| |||| | ||| | | ||||| Sbjct 25852509 ACGAGATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCAGACAAAGTACGTCCATCTT 25852566 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 |||||||||| || ||||| || | ||| || |||||||| ||||||||||| ||||| | Sbjct 25852567 CAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCT 25852626 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || || || || || ||||| || || | || |||||||| | ||| Sbjct 25852627 GGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCG-AC-CTCGAGAGTGATAGT 25852684 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| |||||||| ||||| Sbjct 25852685 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq16 Length=30823778 Score = 109 bits (120), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| ||||| || || || |||| | ||| | | ||||| Sbjct 1301372 ACGAGATGAAGAGTGAACTCCTTTTGG--ATGTTATAGTCAGACAAAGTACGTCCATCTT 1301429 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 |||||||||| || ||||| || | ||| || |||||||| ||||||||||| ||||| | Sbjct 1301430 CAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCT 1301489 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || || || || || ||||| | | | | |||||||| | ||| | Sbjct 1301490 GGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTGATAGTCT 1301549 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| ||||| |||||||| ||||| Sbjct 1301550 TCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 >seq4 Length=51989874 Score = 109 bits (120), Expect = 4e-18 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||||||| || ||| ||||| || ||||| |||| | ||| | | ||| Sbjct 2293873 ACAAGATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCAGGCAAAGTATGTCCAGCTT 2293816 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 |||||||||| || ||||| | | |||||||||| || ||||||||||||| ||||| | Sbjct 2293815 CAAGTTGTTTACCAGCAAAGACTAATCTTTGCTGACCAAGAGGAATTCCTTCCTTATCCT 2293756 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCGAGAGTAACAGTT 563442 ||| | | ||| || |||||||| | | | | || || |||||||| ||| Sbjct 2293755 GAACCCTGGCCTCTACATTTTCTATTGTATCTGAGGGTTGAACCTT-GAGAGTAATAGTC 2293697 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| || ||||| ||||| Sbjct 2293696 TTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 2293665 >seq134 Length=4000202 Score = 91.5 bits (100), Expect = 1e-12 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||||||||||||||| || ||||| || | ||| || ||||| || ||||||||||| || Sbjct 2759405 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTT 2759464 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTA 563436 ||| || || || || || || || ||||| || || | || || |||||| Sbjct 2759465 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCG-ACCTT-GAGAGTG 2759522 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || || |||| ||||| |||||||| ||||| Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq29 Length=25414214 Score = 91.5 bits (100), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342 || ||||| |||||||| |||| | ||| | | ||||||||||||||| || ||||| Sbjct 3398992 TTGTTTGG--ATATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAA 3399049 Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402 || | ||| | || |||| ||||||||||| ||||| || || || || || Sbjct 3399050 GATCAATCTCTATTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATT 3399109 Query 563403 CTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAAC 563462 || || ||||| | | | | || ||||| | ||| || || ||||| ||||| || Sbjct 3399110 TTCTATCGTATCTGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCAC 3399169 Query 563463 GAAAATTTGCAT 563474 ||||| ||||| Sbjct 3399170 AAAAATCTGCAT 3399181 >seq69 Length=11345371 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||||| || ||||| |||| | || | | ||||| Sbjct 5552168 ACGAGATGAAGAGTGGACTCCCTTTGG--ATGTTGTAGTCAGACAAAGCACATCCATCTT 5552111 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 |||||||||| || |||||||| | ||| || ||||| || |||||||||||||||| | Sbjct 5552110 CAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGAATTCCTTCTTTATCCT 5552051 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | | || || || || |||||||| || || | || || ||||| | ||| Sbjct 5552050 GGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCG-AC-CTCCAGAGTGATAGT 5551993 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||| ||||| || || || | ||| Sbjct 5551992 CTTCCCCGAAAGGGTTTTCACAAACATCTACAT 5551960 >seq10 Length=36298645 Score = 86.0 bits (94), Expect = 5e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 428255 GTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCC-TGACATTCTAGTTCCAAATTG 428313 || || ||||| | || ||| || | ||||||||| || ||| | | ||||||||| || Sbjct 14301807 GTGAAAATATAACGTGGGCTGGCAGCATCTTTACCACCATGA-AGCCGAGTTCCAAACTG 14301865 Query 428314 TCCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCATATTAAC 428373 ||| ||||| | |||||||| ||||||||||||||| | || || |||| ||| || Sbjct 14301866 GCCAATAGGCTGAAGCAAATTAATGTTATTACTTCCCACAAAGTTCTGAGCCAAATTCAC 14301925 Query 428374 AATGGT 428379 ||| || Sbjct 14301926 AATAGT 14301931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028616698469050