Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq61 158 1e-33 seq37 98.7 1e-15 >seq61 Length=12918418 Score = 158 bits (174), Expect = 1e-33 Identities = 444/667 (67%), Gaps = 21/667 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| |||| |||| |||| || || || || ||||| |||| Sbjct 2373318 CATCACTCCCATCCTCTGATACTCTCTTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 2373376 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| ||||| || ||||||||||| | || | | | | | || | Sbjct 2373377 CCAGTGAGATATTCTCCATGAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTGAA 2373434 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCAT- 37047 || ||| || ||| || || | |||||||| || || | ||||| ||| Sbjct 2373435 ACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAA--CATG 2373492 Query 37048 -AGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATT 37106 |||| || ||||| || || || || | || || ||| || | ||||||| | Sbjct 2373493 CAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTA 2373552 Query 37107 ACAGCATCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTT 37165 |||||| | ||| | | || | || || | | || | | ||| || ||| Sbjct 2373553 ACAGCACTGAGGATTATTTCTTTCACTCTCTGCTCC-GAAGGTTTGTGTATTAGATGTTT 2373611 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || ||||| ||||| || ||||| ||||| || || || | |||||| || Sbjct 2373612 GAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGA 2373671 Query 37226 AAAGGTTAATCCTGGCATTAAACCTC-tttttttAATCCAAAATATTGCTGCAAAAGATC 37284 ||| || | || ||||| | |||| ||||||| | ||| ||||| | |||||| || | Sbjct 2373672 AAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGC 2373731 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 |||||||||| || ||||| ||||| ||||| || | | |||| || | | | Sbjct 2373732 CAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCCTAGGGAGCCTC 2373791 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | | | ||||| | ||| || ||||| || ||||| ||||||| Sbjct 2373792 TCT-GTGTCCAATCC-CCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTT 2373849 Query 37405 CAATTGCTTTTAAGAGAAAGtttt---tttCTTCACTATCTGTTATATAAGTATCAATTA 37461 |||| || || ||||| ||||| || ||| |||| | | ||||||||| | | Sbjct 2373850 CAATAGCATTGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGA 2373906 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||| |||||||||||||| | ||||| | || | ||||| ||||| ||||| | Sbjct 2373907 GGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGC 2373966 Query 37522 TAGCTTC 37528 ||||| Sbjct 2373967 GGGCTTC 2373973 >seq37 Length=21270769 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| || || || | |||||| ||||| || | || ||||| | ||||||||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| ||||||||||| || ||||| ||||| || || || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGCC 14837934 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 14837935 ACGACACGT 14837943 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| ||||| |||| |||| || || || || ||||| |||| Sbjct 14836204 CATCACTCCCATCCTCTGATACTCTCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 14836262 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| ||||| || ||||||||||| Sbjct 14836263 CCAGTGAGATATTCTCCATGAAGTCAAATGGATT 14836296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592221696133800