Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19 161 8e-35 seq40 150 1e-31 seq64 96.9 3e-15 >seq19 Length=29725166 Score = 161 bits (178), Expect = 8e-35 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 5420998 AGACCGGTGACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAAGGGC 5421057 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || |||||||| |||| | Sbjct 5421058 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTTCACC 5421117 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || |||||| ||||| || |||||||| Sbjct 5421118 ACATAGAACTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATGAG 5421161 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 5425050 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 5425109 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| ||| ||| ||||||| || |||| ||| |||||||| |||||||| | Sbjct 5425110 CTCTGGCGGAGAATCCCAGGCTGTCCAAGAAATCTCGGGACCCGTTGGCATCCCAGATTT 5425169 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || || || | |||||||| || Sbjct 5425170 TCACTCCCTTAGACGACAGTTCATTAGCATTTGTGGATCC 5425209 >seq40 Length=19741185 Score = 150 bits (166), Expect = 1e-31 Identities = 188/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||| ||| | || || ||||| ||||| || ||||| |||| || || ||| || | Sbjct 3617836 ATGAGTTCCTGTTGGAGGCTCTTTGAGCTCTCTACTGAGAACTAAATTGATTCTGCCTTT 3617777 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||||||||||| || Sbjct 3617776 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCATGTCTTCCTACCCATTATCACCAGATT 3617717 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| ||||| | | || || || | Sbjct 3617716 CTGTTTACCTTCTACTGAAGAGGTGGTGGTCATTTTCCGAAAACATGTGAATTCATTTCT 3617657 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACAC 112319 ||| || |||| ||||| || ||||| || ||||||||||||| | |||| Sbjct 3617656 GAGT------GGGGGCCAGGGCAGCTCCCCGTTCTTGCCGATGCCCATGTTCTGTGACAC 3617603 Query 112320 GGCCACGATACCGTTCAG 112337 ||| || |||| |||||| Sbjct 3617602 GGCGACAATACAGTTCAG 3617585 >seq64 Length=12214461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 7697427 TTGAGCTCTCTACTGAGAACTAAATTGATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 7697486 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||||||||||| ||||| || ||| Sbjct 7697487 ATGGAGAACCACGTCTTCCTACCCATTATCACCAGATTCTGTTTACCT 7697534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408553631553185