Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq134 113 4e-20 seq69 107 2e-18 seq57 96.9 3e-15 >seq134 Length=4000202 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| | |||||| || || || ||||| || | ||| || | | ||| | |||| Sbjct 2759349 AAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACACCCATCT 2759408 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| ||||| ||||| ||||| | |||||||||||| ||||| ||||| ||||| Sbjct 2759409 TCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCC 2759468 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || || ||| |||||| || || || | ||| || | ||||||| || Sbjct 2759469 TGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTGATAGTC 2759528 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||| || || |||||||| Sbjct 2759529 TTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq69 Length=11345371 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| | |||||| || || || |||| || ||||| || | | || | |||| Sbjct 5552171 AAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGACAAAGCACATCCATCT 5552112 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| ||||| ||||| ||||| | |||||||||||| |||| ||||||||||| Sbjct 5552111 TCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGAATTCCTTCTTTATCC 5552052 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || | || || ||| |||||| || || || | ||| || || ||||||| || Sbjct 5552051 TGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGATAGTC 5551992 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||| ||||| |||| ||| Sbjct 5551991 TTCCCCGAAAGGGTTTTCACAAACATCTACAT 5551960 >seq57 Length=13814656 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| | |||||| || || || ||||| || |||| || | | ||| | |||| Sbjct 7965724 AAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGTCCATCT 7965665 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| ||||| ||||| ||| | | |||||||||||| ||||| ||||| ||||| Sbjct 7965664 TCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCC 7965605 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 || || || || ||| ||||||| || || | | ||| || || ||||||| Sbjct 7965604 TGGATCTTGGCCTTGACATTTTCTAC-GTATCCAAGGGTTCGACCTCGAGAGTGA 7965551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396216363235665