Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq100 183 6e-41 seq61 143 5e-29 seq26 120 6e-22 seq37 93.3 8e-14 seq119 87.8 3e-12 >seq100 Length=6927380 Score = 183 bits (202), Expect = 6e-41 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| || | Sbjct 1573165 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGCTCGC 1573106 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | || || |||||| || ||||| || | ||||||| |||||| || | Sbjct 1573105 GGAGGATGCCGGCCGTGCTGGACAACCCCGCGTTCTCGGCCTTGAGCGTCTTCACCTTGT 1573046 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| |||||||| ||| ||||| |||||||| |||| |||| Sbjct 1573045 CCTCCAGGCGCGCGATGCGCTCCAGTTTCCGCTTCCGGCACTTGGTGGCCGCCAGTCGGT 1572986 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 1572985 TCCGTAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATAGGGGAC 1572927 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 2898615 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCACGCAGCAAGCTCGCCGTGGACGCCAGC 2898556 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| |||||| |||||||| || |||| |||||| ||||| Sbjct 2898555 TCCGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 2898496 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| || || | |||||| || || | ||| || ||||||||| Sbjct 2898495 TTGCGCTTGCGGCACTTGGACGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 2898436 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 2898435 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2898403 >seq61 Length=12918418 Score = 143 bits (158), Expect = 5e-29 Identities = 551/850 (65%), Gaps = 28/850 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || | ||||| |||||||||||||| |||||||| |||| ||||| ||||| Sbjct 2373333 CTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTC 2373392 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||||||| || || || | | | | | | || || | | || | || ||||| Sbjct 2373393 CATGAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTGAAACCTAGCT---CCAGC 2373447 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || | || | || || || | | ||| | || |||||| || ||| Sbjct 2373448 ATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCAATG 2373507 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| || || ||||||| ||||| | || || | Sbjct 2373508 AGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCACTGAGGATT 2373567 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || | ||| || ||||||| || || ||| | | || ||| Sbjct 2373568 ATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGA---ACATCAGGCAA 2373624 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| || || || |||| ||| || || | ||||| || ||| ||| Sbjct 2373625 GCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 2373684 Query 48194 GGCATGACCCC-CCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || ||| | ||| |||||||| || | || || |||||||| |||||||| Sbjct 2373685 GGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGAT 2373744 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || ||||||||||| || || || | ||||| | | ||| | ||| | || Sbjct 2373745 CCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTGTCCAAT 2373803 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 || ||| |||||||| ||||||||||||| || ||||| || || || || ||| Sbjct 2373804 CCCCACAAG-GCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGAA 2373862 Query 48373 GAGCTTCTTGCACTCACCT-GCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 ||| || || | || | || || | || || |||||| || | ||||| Sbjct 2373863 GAGGTT-TTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACT---GTACA 2373918 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | |||||||| || || | || | || || || ||||| | ||| || | Sbjct 2373919 TTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTGA 2373978 Query 48489 CCTGCACTTCTGTGGAGAATCT---CTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 ||| |||||| | || || ||| | ||| |||||| |||| || || || | | Sbjct 2373979 TCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-GGGG 2374037 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || ||||| || |||| || ||| | | ||||| | | |||| || | || Sbjct 2374038 CGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTCCC 2374097 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 | ||| | ||| ||| ||| ||||||| || | |||||||||||||| || | Sbjct 2374098 GGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGCCT 2374157 Query 48666 TTTTGTACAT 48675 | ||||||| Sbjct 2374158 TCCTGTACAT 2374167 >seq26 Length=27430663 Score = 120 bits (132), Expect = 6e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||| ||||| ||||||||||| || || || | | ||||| | ||| Sbjct 17764371 CATGACTTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCATGTTGGCGGTGGACGCCAG 17764312 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||| | | || | |||||||| |||||||||||||||||||| ||||| Sbjct 17764311 CTCTGAGTTCTGCGCTTTCAAGGTTTTCACTTTTTCCTCCAGCCGCGCGATGCGCTCCAG 17764252 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | ||||| |||| ||| || | |||||||| | | ||| | |||||||| Sbjct 17764251 CTTCCTTTTCCGGCACTTGGAGGCGGCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTT 17764192 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || |||||| ||||||||||||||| ||| Sbjct 17764191 GATCCGCTCCTGGGACTCCATGTCGATCGGGGAC 17764158 >seq37 Length=21270769 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| ||| || || | ||||| || ||| |||||||| | || || | ||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || | ||| ||||||||||| |||||||| || |||||||||||||| || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGC 14837933 >seq119 Length=4927305 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 213543 TCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGAC-TTTGCGTT 213601 || |||||||||||||||||| |||||| |||| |||||| || || || ||| || | Sbjct 3051853 TCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGATT--ACTTTTCCGAT 3051796 Query 213602 GGCA-GAATCCTTGTAGAGCATGTAGGGGG-ACCCG 213635 ||| ||||| ||||||||||||||||||| ||||| Sbjct 3051795 TGCAGGAATCTTTGTAGAGCATGTAGGGGGTACCCG 3051760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931383230764800