Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq23 82.4 1e-10 >seq23 Length=28655905 Score = 82.4 bits (90), Expect = 1e-10 Identities = 183/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 153742 TCGCCCGCGTCCCTCAGATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGG 153801 ||| | || ||| | |||||||| || ||| | | ||| | | ||||| || ||| Sbjct 14175754 TCGTCTGCTTCCTTAAGATGCTCTCTGCAAAGTTCCGCGGAAGTTGTGATTGTGACATGG 14175695 Query 153802 CAAAAGAAGAAAGC-TGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGT 153860 || || || | || | || ||||||||||||||||||| | ||||| || || Sbjct 14175694 CAGAA-AATCAGGCGTTTAAGTCCAGAAAATATGGCCACATTCAGCAAGAAGTTTGGAGT 14175636 Query 153861 AGTGCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAG 153920 ||| ||||||| ||||| |||| || || || ||| || | | || ||| || Sbjct 14175635 TGTGGTTCAGCCTGACTATAAGGATAAGATAAACATCACCCAACTGGACCTC--AAAGAG 14175578 Query 153921 T--AGTATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTT 153978 | | | || || |||||| | || ||||||||||| | ||||| | ||| || || Sbjct 14175577 TCAACCCTTACCTTCTGGAATACTACCCTGGATGATGAGGAGTGTTACAAGTGCCTCTTC 14175518 Query 153979 AATATGTTCGGTTCTGGTAAGGTATCGGGA 154008 |||| ||||| ||||| || | || ||| Sbjct 14175517 AATACCTTCGGGTCTGGGCAGATCTCTGGA 14175488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649194946897200