Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-16 seq16 100 2e-15 seq21 96.9 2e-14 seq13 96.9 2e-14 seq65 95.1 8e-14 seq134 86.0 4e-11 seq29 86.0 4e-11 >seq14 Length=32092909 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||| ||||| || || || ||||| ||||||||||| || || ||||||| Sbjct 9397961 ATGCTGTTGTTACAGTTCCTGCTTACTTCAATGACTCTCAACGTCAGGCTACCAAAGATG 9397902 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | || || || ||||| ||||| || || || Sbjct 9397901 CTGGAACCATTGCTGGTCTCAATGTACTTCGGATCATCAATGAGCCAACTGCTGCTGCTA 9397842 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | || ||||| Sbjct 9397841 TTGCCTATGGCTTGGACAAGAA 9397820 Score = 95.1 bits (104), Expect = 8e-14 Identities = 302/462 (65%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 475365 CAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATG 475422 |||||||||||||| | || | || || ||||||||||| || || | || | ||| Sbjct 9397635 CAACAGCTGGAGATACCCACTTAGGCGGAGAAGATTTTGACAACCGAATGGTCAACCAT- 9397577 Query 475423 GTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGCA 475480 | | | | ||| |||||||| || |||| || ||| | | | || || Sbjct 9397576 -TTTATCGCAGAATTCAAGAGAAAGCATAAGAAGGACATCAGTGAGAACAAGCGG--GCT 9397520 Query 475481 TTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAA 475540 | | ||||| | ||||||||||| ||||| ||||| | || ||||| || || Sbjct 9397519 GTCCGTCGTCTGCGCACTGCTTGTGAGCGTGCGAAGCGTACCCTCTCTTCCAGCACCCAG 9397460 Query 475541 ACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGG 475600 | | | |||| ||||||| || | |||||| || || | |||| ||||| || Sbjct 9397459 GCCAGTATTGAGATTGATTCCCTGTATGAAGGCATCGACTTCTATACCTCCATTACCCGG 9397400 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| |||||||| | | ||||||| || || || | || || || || | Sbjct 9397399 GCTCGGTTTGAAGAGTTGAATGCTGATCTGTTCCGAGGCACTCTGGACCCAGTAGAGAAG 9397340 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | || | ||| | || | |||||||| || |||| || ||||| || || || || Sbjct 9397339 GCCCTTCGCGATGCCAAGTTGGACAAATCCCAGATCCACGATATTGTCCTGGTGGGTGGC 9397280 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTT 475779 || || | ||||| || || ||||| |||| || | || ||||| ||| | | Sbjct 9397279 TCTACCCGTATTCCCAAGAT-TCAGAAACTTCTTCAGGATTTCTTCAATGGAAAAGAACT 9397221 Query 475780 AAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || |||||||| ||||| |||||||| || Sbjct 9397220 CAACAAGAGCATCAACCCTGATGAGGCTGTAGCATATGGTGC 9397179 Score = 91.5 bits (100), Expect = 1e-12 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| ||| | Sbjct 9396526 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATCCCTCCTGCGCCCCGT 9396467 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| ||||| || ||||||||||| ||||| |||||||| || ||||| || Sbjct 9396466 GGTGTTCCTCAGATTGAGGTCACTTTTGATATCGATGCCAATGGTATCCTCAATGTGTCT 9396407 Query 476171 GCT 476173 ||| Sbjct 9396406 GCT 9396404 >seq16 Length=30823778 Score = 100 bits (110), Expect = 2e-15 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| | ||| | |||||||||||| || |||||||| || | | ||| Sbjct 1301402 TTATAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGT 1301461 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC- 480712 |||||||| |||||||||||||| || || ||||| |||||| ||| || ||||| Sbjct 1301462 TGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCC 1301521 Query 480713 -AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||| || || || ||||| || || || || || || |||||||| || Sbjct 1301522 GAGGGTTTGA--CCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 1301577 >seq21 Length=29177037 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| || |||||||| || | | ||||||||||| |||||||||||||| Sbjct 16234709 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 16234768 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| |||||| ||| || ||||| | | || || || || || Sbjct 16234769 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGAT 16234828 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || || |||||||| || Sbjct 16234829 AGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 16234861 >seq13 Length=31987310 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| || |||||||| || | | ||||||||||| |||||||||||||| Sbjct 25852562 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 25852621 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| |||||| ||| || ||||| | | || || || || || Sbjct 25852622 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGAT 25852681 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || || |||||||| || Sbjct 25852682 AGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 25852714 >seq65 Length=11877709 Score = 95.1 bits (104), Expect = 8e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || | || ||||| ||| || |||||||||||| |||| || || Sbjct 7238467 AGGTGAACGACCTCTGACGAAAGACAATCACCTTCTTGGAACTTTTGATCTGACTGGAAT 7238526 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| |||||| Sbjct 7238527 TCCTCCTGCTCCCCGTGGGGTGCCACAGATTGAAGTCACCTTTGAGATAGATGTAAATGG 7238586 Query 476155 TATTCTT 476161 |||||| Sbjct 7238587 CATTCTT 7238593 >seq134 Length=4000202 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| || |||||||| || | | |||||||| || |||||||||||||| Sbjct 2759405 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTT 2759464 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734 || || ||||| |||||| ||| || ||||| || || || || || || Sbjct 2759465 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTT--GAGAGTG 2759522 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || | || || || |||||||| || Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTG 2759557 >seq29 Length=25414214 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| || |||||||| || | | | ||| |||| |||||||||||||| Sbjct 3399026 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTATTGGTCAGATGGAATTCCTTCCTT 3399085 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734 || || ||||| |||||| ||| || ||||| || || ||| ||||| || Sbjct 3399086 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCTGAGGGTTTGA--CCTCAAGAGTG 3399143 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || || || ||||| || Sbjct 3399144 ATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTG 3399178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267628215626060