Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq61 363 2e-95 seq23 114 1e-20 seq17 98.7 1e-15 >seq61 Length=12918418 Score = 363 bits (402), Expect = 2e-95 Identities = 680/993 (68%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || ||||| || || ||||| || |||| ||| || | ||| || || ||| |||||| Sbjct 5050349 TGCCGCAGGTGCTCATCCAGGCACTGGATGGCAAAAAGGTCCACATCAGTGTCAAATTTA 5050290 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| | | | || ||||| | || || |||| || |||||| Sbjct 5050289 TTGGCAAATAAGTGGTGCGTGCCC---AGCATCCACTTCAAATCACCGGCTCCAAACACG 5050233 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| || | || || ||| |||| || ||||| | || || || || |||| Sbjct 5050232 CACACGGAGCGCAGATGGACCCCGCTGCAGGGGGGGTAGGGCGCGCCCTTGGCAGTGTCA 5050173 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| | | || ||||||| || ||||||| Sbjct 5050172 CCTTCAAAGTACTGCCACTTGACAAACCTCACACTGGCAAGCATGTCAGACATGTCGTAC 5050113 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| | | || | || || || || | || || ||||| | |||||||| || Sbjct 5050112 TTGTGGCTTAAGGACATGGAGCCTGGGACTTCAGGGATCCGCTGAATCGTGGCCCAGAGA 5050053 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTGTC 160405 | || || |||||||| |||||||| | ||| ||||| ||| ||| | ||| || || Sbjct 5050052 TACTCATCAGGGCTGTAGGTGTCCTTCGCCCACTCCATAAAC-CTCTGGATT---CTTTC 5049997 Query 160406 CCGC---AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | |||| || | || | || |||||||| || ||||| || || Sbjct 5049996 ATTCTCTAACACGTACCCCACAAACTGCCTACTAACCACAAAGTAGGCACTGCCAGAAAA 5049937 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | | ||| || | ||||||| ||| || || | || | || | Sbjct 5049936 GAGAGGTGTCTGGAGAGGAGGGGGCGCTTTGTCGGCACCAGTTTTGGTCAGCTTCCCGCT 5049877 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 |||| ||| | ||||||||||| || |||| | || ||||| || ||||| Sbjct 5049876 GACCACTTCGTAGTGTTTCTTCCACCTTTCCTTCTTATTGGGCGGCATTTTCTCTGTCTC 5049817 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || |||| |||| | || || |||| | |||| || || ||||| || |||| Sbjct 5049816 CAGGTTGTTTCCACCCATCAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTGAT 5049757 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||| || || | ||||| | ||||||| |||||||||| | || |||| | || ||| Sbjct 5049756 CGGGAAATCCATGCCGCAGAGATTTATCAGGTACTTCCATGTGGCACTCATGCGGTACAG 5049697 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| |||||| || | |||||||| ||||||||||| ||||| || || |||||||| Sbjct 5049696 GTCCTGCATGCAGTTGAGGTCTGCCTGGACGCGGCTCCATGAAGCATAGACCACGTTCTC 5049637 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAG 160819 || ||||| ||||| || |||| |||||| || | || || || || |||| Sbjct 5049636 CAGCCGGCTGGCTACAAACACATTATTGAAACAGGATGCAATGCCAGTTACTGCCCCCAG 5049577 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 |||| | || |||| ||| |||||| || | |||||| | ||||| ||| || Sbjct 5049576 AAAGGA---CTCCTCCGATTTTTTGTCCACATGAATGCAATAAAAATTCTGGGGCATATA 5049520 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||| || | || | ||| || ||||| || || |||||||||| ||| || || || || Sbjct 5049519 GATAGCGCGCAGGAGCCTGTCCAACATTTCGATTTTATGATGGACCACTATCGAATAAGC 5049460 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || |||||||| | ||| || || |||| | |||| | ||||| ||| ||||||| Sbjct 5049459 GATTGGAAACTCAGCCTCTTCCTTGCTGAGGGGCTCGGTGAAATACTTGCGCCTCTTGAT 5049400 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | |||||| | |||||||| || || Sbjct 5049399 GAAAGATGTACAATCGCTGGTCATGTTTATGTA 5049367 >seq23 Length=28655905 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 |||||| |||| || || ||||| || |||||||||||| || | || | || || || Sbjct 14175488 TCCAGAGATCTGCCCAGACCCGAAGGTATTGAAGAGGCACTTGTAACACTCCTCATCATC 14175547 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || ||| |||||||| || || || ||||| | | |||| ||| || || ||||| | Sbjct 14175548 CAGGGTAGTATTCCAGAAGGTAAGGGTTGACTCTTTGAGGTCCAGTTGGGTGATGTTTAT 14175607 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 ||| ||||| ||| ||||| ||||| || |||| |||||| |||||||| || Sbjct 14175608 CTTATCCTTATAGTCAGGCTGAACCACAACTCCAAACTTCTTGCTGAATGTGGCCATATT 14175667 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTC 168397 || || || | | || |||||||| || || |||| ||| || Sbjct 14175668 TTCTGGACTTAAACGCCTGATTTTCTGCCATGTCACAATCACAACTTC 14175715 >seq17 Length=30559220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 11692721 AGATAATTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 11692662 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | ||| | ||||| | | || Sbjct 11692661 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 11692602 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 11692601 CGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 11692542 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 11692541 AGATAAAATTTGCA 11692528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577126520242200