Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq21 113 8e-20 seq16 113 8e-20 seq13 113 8e-20 seq69 102 1e-16 seq134 98.7 2e-15 seq107 95.1 2e-14 >seq21 Length=29177037 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || | |||||| || ||||| || |||||| Sbjct 16234683 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTC 16234742 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || |||||||| ||||| || || |||| || | |||| || ||| Sbjct 16234743 TGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTA 16234802 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || || || ||||| ||||| || || || || ||||| || || || ||| Sbjct 16234803 TCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 16234862 Query 193359 ATTTT 193363 || || Sbjct 16234863 ATCTT 16234867 >seq16 Length=30823778 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| || || || | ||| || | |||||| || ||||| || |||||| Sbjct 1301399 ATGTTATAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTC 1301458 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || |||||||| ||||| || || |||| || | |||| || ||| Sbjct 1301459 TGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTA 1301518 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | | || || ||||| ||||| || || || || ||||| || || || ||| Sbjct 1301519 TCCGAGGGTTTGACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 1301578 Query 193359 ATTTT 193363 || || Sbjct 1301579 ATCTT 1301583 >seq13 Length=31987310 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || | |||||| || ||||| || |||||| Sbjct 25852536 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTC 25852595 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || |||||||| ||||| || || |||| || | |||| || ||| Sbjct 25852596 TGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTA 25852655 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || || || ||||| ||||| || || || || ||||| || || || ||| Sbjct 25852656 TCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 25852715 Query 193359 ATTTT 193363 || || Sbjct 25852716 ATCTT 25852720 >seq69 Length=11345371 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || |||||||| |||||||||||||| || | ||||||||||| Sbjct 5552115 ATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGAATTCCTTCTTT 5552056 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || | |||| || | |||| || ||||| || | || || || ||||| || Sbjct 5552055 ATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGAT 5551996 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || || | || ||||| ||||| || | ||| || Sbjct 5551995 AGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq134 Length=4000202 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || ||||| || |||||||||||||| || || |||||||| || Sbjct 2759405 ATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTT 2759464 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | |||| || ||||| || | || || | ||||| || Sbjct 2759465 ATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTGAT 2759524 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || || | || ||||| || || || ||||| || Sbjct 2759525 AGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq107 Length=6112886 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || || || || ||||| |||||||||||||| |||||||| || Sbjct 2237136 ATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCTTCCTT 2237077 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | |||| || |||| || | || || || ||||| || Sbjct 2237076 ATCCTGGATCTTGGCCTTGACATTTTCTATCATATCTGAGGGTTCGACCTCCAGAGTGAT 2237017 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||| || || | || ||||||| | || ||||| ||| Sbjct 2237016 AGTCTTTCCCATAAGGGTTTTTATGAGAATCTGCATCTTA 2236977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899509949240400