Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq21 141 2e-28 seq13 141 2e-28 seq16 138 2e-27 seq29 129 1e-24 seq69 114 3e-20 seq107 113 9e-20 seq57 113 9e-20 seq134 105 1e-17 seq39 105 1e-17 seq36 96.9 7e-15 seq4 95.1 2e-14 >seq21 Length=29177037 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | ||| | ||| || ||| || || ||||| Sbjct 16234637 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 16234696 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||||||||| |||||||||||||||||||| Sbjct 16234697 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 16234756 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || || ||||| ||| | ||| || | ||| || Sbjct 16234757 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 16234816 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || || || | ||||| | || |||||||| || Sbjct 16234817 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | ||| | ||| || ||| || || ||||| Sbjct 25852490 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 25852549 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||||||||| |||||||||||||||||||| Sbjct 25852550 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 25852609 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || || ||||| ||| | ||| || | ||| || Sbjct 25852610 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 25852669 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || || || | ||||| | || |||||||| || Sbjct 25852670 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 >seq16 Length=30823778 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | ||| ||| || ||| ||||| ||||| Sbjct 1301353 ACCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGA 1301412 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||||||||| |||||||||||||||||||| Sbjct 1301413 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 1301472 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || || ||||| ||| | ||| || | || || Sbjct 1301473 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGAC 1301532 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || || || | ||||| | || |||||||| || Sbjct 1301533 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 >seq29 Length=25414214 Score = 129 bits (142), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| || || ||| |||| || | |||||||||||||||||| ||||| Sbjct 3398999 GATATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCT 3399058 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||| |||| ||| |||||||| ||||| || || || || ||||| ||| | Sbjct 3399059 CTATTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGT 3399118 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| | || || || ||||| || || || || || | ||||| | ||| ||||| Sbjct 3399119 ATCTGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTG 3399178 Query 192534 CATTTT 192539 ||| || Sbjct 3399179 CATCTT 3399184 >seq69 Length=11345371 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| ||| | || || | ||| | ||| | ||| | ||| || || ||||| Sbjct 5552187 ACCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGA 5552128 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || | | | |||| || | ||||||||||||||| || |||||||||||||| ||| | Sbjct 5552127 CAAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTG 5552068 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||||||||| || | || || ||||| ||| | ||| || | ||| || Sbjct 5552067 AATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGAC 5552008 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || || | | ||||| | ||| |||| ||| || Sbjct 5552007 CTCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq107 Length=6112886 Score = 113 bits (124), Expect = 9e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || || || |||| || | |||||||||||| ||||| ||||| Sbjct 2237163 GATGTTGTAGTCAGACAAAGTATGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCT 2237104 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||||| || |||||||| ||||| || || || || ||||| ||| Sbjct 2237103 TTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCAT 2237044 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| | ||| || || ||||| || || || || | | ||||| || | ||||| Sbjct 2237043 ATCTGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCCATAAGGGTTTTTATGAGAATCTG 2236984 Query 192534 CATTTTA 192540 ||| ||| Sbjct 2236983 CATCTTA 2236977 >seq57 Length=13814656 Score = 113 bits (124), Expect = 9e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | ||| | || || | ||| | ||| | ||| || ||| | || |||| Sbjct 7965741 TACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAG 7965682 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| || | |||||||||||||||||| ||||||||||||| |||| Sbjct 7965681 ACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTG 7965622 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA-GAATCTGACGATTCT 192486 | |||||||| ||||| || || || || ||||| || || | ||| | | ||| Sbjct 7965621 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATT--TTCTACGTATCCAAGGGTTCG 7965564 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| || || || || | | ||||| || || |||||| || Sbjct 7965563 ACCTCGAGAGTGATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCATCTT 7965511 >seq134 Length=4000202 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCT-AAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||| ||| ||| | || || | ||| | ||| | ||| || ||| | || || | Sbjct 2759333 ACCAC-TCTGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTG 2759391 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||| || | |||||||||||||||||| |||||||||||||| |||| Sbjct 2759392 ACAAAGTACACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTG 2759451 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || || ||||| ||| | ||| || | ||| | Sbjct 2759452 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGA 2759511 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||| || || || || | | ||||| | || |||||||| || Sbjct 2759512 CCTTGAGAGTGATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq39 Length=20300788 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | ||| | ||| || ||| || || ||||| Sbjct 4804633 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 4804574 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||||||||| |||||||||||||||||||| Sbjct 4804573 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 4804514 Query 192429 TATTCCTT 192436 ||||||| Sbjct 4804513 AATTCCTT 4804506 >seq36 Length=22794405 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || || ||| |||| || | |||||||||||||||||| ||||| Sbjct 17146331 GATGTTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCT 17146390 Query 192414 CTGTTGATCAGGTGGTATTCCTT 192436 ||||||||||||||| ||||||| Sbjct 17146391 CTGTTGATCAGGTGGAATTCCTT 17146413 >seq4 Length=51989874 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || | ||| | ||| | ||| || ||| || || |||| || || || || | Sbjct 2293876 AAAACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTATGTCCAGCT 2293817 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || | ||||||||||||||||| |||||| || ||| || | || |||||||| ||||| Sbjct 2293816 TCAAGTTGTTTACCAGCAAAGACTAATCTTTGCTGACCAAGAGGAATTCCTTCCTTATCC 2293757 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || | | | |||||| ||| | |||||| | || || | |||||||| || Sbjct 2293756 TGAACCCTGGCCTCTACATTTTCTATTGTATCTGAGGGTTGAACCTTGAGAGTAATAGTC 2293697 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | ||||| | ||| |||||||| || Sbjct 2293696 TTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 2293662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| || || | | |||| || | |||||||||||||||||| ||| | Sbjct 38965459 GATATTGTAGTCAGACAAAGTACATCCATCTTCAAGTTGTTTACCAGCAAAGATCAATTT 38965518 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || ||||| ||||| | |||||||||||| || Sbjct 38965519 CTATTGATTGGGTGGAAATCCTTCTTTATCCTG 38965551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984317977665750