Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21 132 9e-26 seq13 132 9e-26 seq16 123 5e-23 seq29 118 2e-21 seq69 113 8e-20 seq134 105 1e-17 seq57 104 4e-17 seq107 102 1e-16 seq39 95.1 2e-14 >seq21 Length=29177037 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | ||| || || || || || || Sbjct 16234637 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 16234696 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||||||||||||||| || ||||||||||| |||||||| Sbjct 16234697 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 16234756 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || || ||||| ||| ||||| || | ||| || Sbjct 16234757 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 16234816 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || || || | ||||| | ||| |||||||| || Sbjct 16234817 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | ||| || || || || || || Sbjct 25852490 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 25852549 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||||||||||||||| || ||||||||||| |||||||| Sbjct 25852550 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 25852609 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || || ||||| ||| ||||| || | ||| || Sbjct 25852610 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGAC 25852669 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || || || | ||||| | ||| |||||||| || Sbjct 25852670 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 >seq16 Length=30823778 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| | || || | ||| | ||| ||| || || ||||| || || Sbjct 1301353 ACCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGA 1301412 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||||||||||||||| || ||||||||||| |||||||| Sbjct 1301413 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 1301472 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || || ||||| ||| ||||| || | || || Sbjct 1301473 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGAC 1301532 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || || || | ||||| | ||| |||||||| || Sbjct 1301533 CTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 >seq29 Length=25414214 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || |||| ||| | || || | ||||||||||||||| || |||||| Sbjct 3399000 ATATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTC 3399059 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 | |||||||| ||| |||||||| ||||| || || || || ||||| ||| ||| Sbjct 3399060 TATTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTA 3399119 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | || || || ||||| || || || || || | ||||| | || |||||| Sbjct 3399120 TCTGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGC 3399179 Query 172068 ATTTT 172072 || || Sbjct 3399180 ATCTT 3399184 >seq69 Length=11345371 Score = 113 bits (124), Expect = 8e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC--TTTAGAAATATTATAATCT 171899 |||||||| ||||| || || | ||| | ||| | ||| ||| || | || || || Sbjct 5552187 ACCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGA--TGTTGTAGTCA 5552130 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| | | | || || | |||||||||||||||||| ||||||||||| || ||| Sbjct 5552129 GACAAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGT 5552070 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | |||||||||||||| || | || || ||||| ||| ||||| || | ||| Sbjct 5552069 TGAATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCG 5552010 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| || || || || | | ||||| | || |||| ||| || Sbjct 5552009 ACCTCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq134 Length=4000202 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 171842 ACCACCTCT-AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||| ||| ||||| || || | ||| | ||| | ||| || || | || |||| Sbjct 2759333 ACCAC-TCTGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTG 2759391 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | |||| | | || || | ||||||||||||||| || ||||||||||| || |||| Sbjct 2759392 ACAAAGTACACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTG 2759451 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | |||||||| ||||| || || || || ||||| ||| ||||| || | ||| | Sbjct 2759452 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGA 2759511 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | | ||||| || || || || | | ||||| | ||| |||||||| || Sbjct 2759512 CCTTGAGAGTGATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq57 Length=13814656 Score = 104 bits (114), Expect = 4e-17 Identities = 169/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| | ||||||| | ||||| || || | ||| | ||| | ||| || || | Sbjct 7965749 TTTCTTTGTACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCT 7965690 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || || | ||||||||||||||| || |||||||||| Sbjct 7965689 GTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTG 7965630 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA-GTATCTG 172011 || ||||| |||||||| ||||| || || || || ||||| || || ||||| Sbjct 7965629 ATCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATT--TTCTACGTATCCA 7965572 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| || || ||||| || || || || | | ||||| ||||| |||||| | Sbjct 7965571 AGGGTTCGACCTCGAGAGTGATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCATCT 7965512 Query 172072 T 172072 | Sbjct 7965511 T 7965511 >seq107 Length=6112886 Score = 102 bits (112), Expect = 1e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || |||| || | || || | |||||||||||| || || ||||| Sbjct 2237162 ATGTTGTAGTCAGACAAAGTATGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTT 2237103 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| ||||| || |||||||| ||||| || || || || ||||| ||| || Sbjct 2237102 TGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCATA 2237043 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| || || ||||| || || || || | | ||||| |||| |||||| Sbjct 2237042 TCTGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCCATAAGGGTTTTTATGAGAATCTGC 2236983 Query 172068 ATTTTA 172073 || ||| Sbjct 2236982 ATCTTA 2236977 >seq39 Length=20300788 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/250 (67%), Gaps = 19/250 (8%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | ||| || || || || || || Sbjct 4804633 ACCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 4804574 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||||||||||||||| || ||||||||||| |||||||| Sbjct 4804573 CAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 4804514 Query 171962 TATT-------------------CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 ||| ||||| ||||| || || || || ||||| || Sbjct 4804513 AATTCCTTTAGGAAAAGAAAAAACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTA 4804454 Query 172003 TAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATA 172062 | ||||| || | ||| || || ||||| || || || || || | ||||| | ||| | Sbjct 4804453 TCGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAA 4804394 Query 172063 TCTGCATTTT 172072 ||||||| || Sbjct 4804393 TCTGCATCTT 4804384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904990669101000