Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq21 118 1e-21 seq13 118 1e-21 seq134 116 3e-21 seq16 113 4e-20 seq1111 104 2e-17 seq255 104 2e-17 seq57 102 7e-17 seq5 102 7e-17 seq69 100 3e-16 seq1 95.1 1e-14 seq29 86.0 6e-12 >seq21 Length=29177037 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || ||||| || ||||| || ||| || | Sbjct 16234865 GATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTC 16234806 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || || |||||||| || || |||||||| || || ||||| Sbjct 16234805 GGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 16234746 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || ||||| || || ||| | | |||| || || || Sbjct 16234745 ACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAA 16234686 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || || | || ||| || | || || || Sbjct 16234685 CATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 16234638 >seq13 Length=31987310 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || ||||| || ||||| || ||| || | Sbjct 25852718 GATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTC 25852659 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || || |||||||| || || |||||||| || || ||||| Sbjct 25852658 GGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 25852599 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || ||||| || || ||| | | |||| || || || Sbjct 25852598 ACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAA 25852539 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || || | || ||| || | || || || Sbjct 25852538 CATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 25852491 >seq134 Length=4000202 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || | || || ||||| || ||| | || ||| || | Sbjct 2759561 GATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCCTC 2759502 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || || |||||||| || || |||||||| || |||||||| Sbjct 2759501 GGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCA 2759442 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || ||||| || || ||| | | | ||||||| || | Sbjct 2759441 ACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTACCA 2759382 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||| |||||||| || || || || | || ||| || Sbjct 2759381 CATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGA 2759345 >seq16 Length=30823778 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || ||||| || ||||| || || || | Sbjct 1301581 GATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCAAACCCTC 1301522 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || || |||||||| || || |||||||| || || ||||| Sbjct 1301521 GGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 1301462 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || ||||| || || ||| | | |||| || ||||| Sbjct 1301461 ACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTATAA 1301402 Query 24883 CATTCAAAAGGA 24894 ||| |||||||| Sbjct 1301401 CATCCAAAAGGA 1301390 >seq1111 Length=9394 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| ||||| ||| Sbjct 319 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 260 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | | ||| || ||||| ||||| ||||| || || || || || Sbjct 259 TGACACCATTGAGAATATCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCGCCGGACCA 200 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||| ||||| || ||||||||||||||| | | | | || || || || Sbjct 199 GCAGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 140 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || || || || || || || ||| | |||| | ||| | ||| | |||||| Sbjct 139 CATCCAGAAAGAGTCCACCCTGCATCTGGCGCTGCGCCTCCGCAGGGGCATCATTGAGCC 80 >seq255 Length=264719 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || || || || || || || ||| | ||||| |||| Sbjct 227720 GATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTAGAGGCCAG 227661 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || | || ||| || ||||| ||||| ||||| || | || ||||| Sbjct 227660 TGACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATCCTGCCGGATCA 227601 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| |||| || ||||||||||||||| | | | ||||| || || Sbjct 227600 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCACACCCTCTCAGACTACAA 227541 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || || || || || || ||| ||| | |||| | || | |||| | |||||| Sbjct 227540 CATCCAGAAAGAGTCCACCCTGCACCTGGGGCTGCGCCTCTGCAGGGGCGTCATTGAGCC 227481 >seq57 Length=13814656 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||| || || ||||| || | || || ||||| || ||||| || ||| || Sbjct 7965513 GATGCAGGATTTCATGAAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCCTT 7965572 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || ||||||| || || |||||||| || || |||||||| || |||||||| Sbjct 7965573 GGATAC-GTAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCA 7965631 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||||||| || ||||| || || ||| | | |||| || || | Sbjct 7965632 ACAGAGATGGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAG 7965691 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || || | || ||| || | || || || Sbjct 7965692 CATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 7965739 >seq5 Length=50938590 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||| || | || |||||| |||| ||||| || ||| | | Sbjct 5963806 GATGCAGATTTTTGTGAAAATCCTTATGGGGAAAACTTTTACTCTCGAGGTGGAACCTTC 5963865 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| |||||| || || |||||||| || || |||||||| |||||| |||| Sbjct 5963866 AGTTACAATAGAAAATGTCAAGGCCAAGATCCAGGAAAAGGAAGGAATTCCTCCCAATCA 5963925 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 |||| | ||||||||||| | ||||| | || || | || | | ||| || || Sbjct 5963926 ACAAAGATTGATCTTTGCTCGTAAACAAGTTGAAGA-TGGACGTGCTTAGTCTGACTACT 5963984 Query 24882 ACATTCAAAAGGAATCGACACTACA 24906 |||| |||||||| || || || || Sbjct 5963985 ACATCCAAAAGGAGTCCACTCTTCA 5964009 >seq69 Length=11345371 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| |||| ||| | ||||| || | || || ||||| || || || || ||| || | Sbjct 5551959 GATGTAGATGTTTGTGAAAACCCTTTCGGGGAAGACTATCACTCTGGAGGTCGAACCCTC 5552018 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| || || ||| |||| || ||||||||||| | |||||||| Sbjct 5552019 GGATACAATAGAAAATGTCAAGGCCAAGTTCCAGGATAAAGAAGGAATTCAACCCGATCA 5552078 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| ||||| || ||||| || || ||| | |||| || || || Sbjct 5552079 ACAGAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGATGTGCTTTGTCTGACTACAA 5552138 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||| ||| || || || || | || ||| || | || || || Sbjct 5552139 CATCCAAAGGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGAGGTGG 5552186 >seq1 Length=60238417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| |||| || | |||| || | || || ||||| || ||| | || ||| || | Sbjct 48537808 GATGGAGATTTTCGTAAAAATCCTTATGGGGAAGACTATCACTCTCAAGGTTGAACCCTC 48537749 Query 24763 CGACACAGTA-GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || ||| | | || | || |||||||| || || |||||||| | |||||||| Sbjct 48537748 AGATACAATTCGTAAATTTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCCGATC 48537689 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||| | ||||||||||| || ||||| || || ||| | || |||| || || | Sbjct 48537688 AACAAAGATTGATCTTTGCTGGTAAACAACTTGAAGATGAATGTAATTTGTCTGACTACA 48537629 Query 24882 ACATTCAAAAGGAATCGAC 24900 ||| ||||||||||| || Sbjct 48537628 TCATCCAAAAGGAATCCAC 48537610 >seq29 Length=25414214 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || ||||| || || || || || || | Sbjct 3399182 GATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATCACTCTTGAGGTCAAACCCTC 3399123 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || || |||||||| || || |||||||| || | || || Sbjct 3399122 AGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCATCTGACCA 3399063 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | | | ||||||||||| || ||||| || || ||| Sbjct 3399062 ATAGAGATTGATCTTTGCTGGTAAACAACTTGAAGAT 3399026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449825363316600