Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq85 89.7 5e-13 seq46 89.7 5e-13 >seq85 Length=8688424 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 43867 TCCGCTGGAAGGTGCCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGT 43926 ||| ||||||||||||||| |||||||||||||| || ||||||| || || |||||| Sbjct 6912903 TCCTCTGGAAGGTGCCGTCCAGGGCGGCCACGATCACTGTCTTCCCGGCATTGGCCATGG 6912844 Query 43927 CCTCGCAGAACTCCACTAGGTC 43948 |||||| ||| ||||| | ||| Sbjct 6912843 CCTCGCTGAAGTCCACAATGTC 6912822 >seq46 Length=16750451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 89984 TGTCGTAGTACCGCGTCCAGTGGACGGTGAGGGTCCGGTAGTGCGTGATCAGGCGCAGCA 90043 ||||||||| ||||||| |||| ||| ||||| ||||||| ||| ||| | Sbjct 5296752 TGTCGTAGTTGACGGTCCAGTAGACGCAGAGCTGGCGGTACTGCGTGACCAGCTCCAGGA 5296693 Query 90044 CGGTACCGAAGCCCTCGGCCAGGTCGAAGCGCACCTTCCCGCACCCGGCCTCCCAGGCGT 90103 |||| | |||||||||||||| | ||| || | |||| || || ||||||||||| Sbjct 5296692 CGGTGCGGAAGCCCTCGGCCATGCTGAACTGCCCGTTCCTGCTGCCCTGCTCCCAGGCGT 5296633 Query 90104 AGACCGCCAGCAGGTCCAG 90122 |||| | |||||| ||||| Sbjct 5296632 AGACGGTCAGCAGCTCCAG 5296614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475965165570600