Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1111 134 9e-27 seq49 114 8e-21 seq96 95.1 8e-15 seq94 84.2 1e-11 >seq1111 Length=9394 Score = 134 bits (148), Expect = 9e-27 Identities = 157/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 34770 CCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCA 34829 |||| || | |||| ||| ||||| ||||| |||||||| ||| |||| |||| |||| Sbjct 111 CCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCA 170 Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889 | || || || || || ||||| | |||||||| |||| | || |||||||| | | Sbjct 171 GCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGA 230 Query 34890 TTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 |||| ||||| || || || | ||| ||| ||| || || | ||| |||||||| Sbjct 231 TTTTGGCTTTGAT--ATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTT 288 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| |||||||||||||| Sbjct 289 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq49 Length=15761451 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| |||| ||| ||| |||| |||| Sbjct 14388149 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGTGCGGCCATC 14388208 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || || || || ||||| | | |||||| |||| | | ||||||||| Sbjct 14388209 TTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGTC 14388268 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | | | ||| ||| ||| | | | ||| ||||| Sbjct 14388269 CTGGATTTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGAGGGTGATGGT 14388328 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| | | |||||| |||||||||||||| Sbjct 14388329 CTCGCCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 >seq96 Length=7287561 Score = 95.1 bits (104), Expect = 8e-15 Identities = 168/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 34742 CAATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTA 34801 |||| || ||| || | || | ||| ||||| || | |||| ||| | ||| ||||| Sbjct 3530310 CAATGATGTCC-CCGCAGAAGCGCAGCACCAGATGCAGGGTGGACTCTTCCTGGATGTTG 3530368 Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 | || ||| ||| |||| || | ||||| || || || || || ||||| || || ||| Sbjct 3530369 TGGTTCGAGAGGGTGCGGCCACCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGG 3530428 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTG-TTTGACGGATGCT--ATCGATTCA 34918 ||| || | | || |||||||| | |||||| | ||||| || || | | ||| Sbjct 3530429 TCTGGCAGGATGCCTTCCTTGTCCTGGATTTTTGGCTTTGAT--ATTCTCCAATGTGTCA 3530486 Query 34919 TTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| || | | || |||||||| || | |||||||| |||||||||||||| Sbjct 3530487 CTGAGCTCTACCTTGAGGGGGATGGTCTTGCCA-TCAGGGTCTTCACAAAGATCTGCAT 3530544 >seq94 Length=7567239 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | ||| ||| ||||||||||| ||||| || Sbjct 6929591 CCACCCCTCAGACGCAGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAA 6929650 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||| ||||| || | |||||||| | || Sbjct 6929651 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 6929710 Query 34871 ACCCCCTCCTTGTC 34884 | || ||||| || Sbjct 6929711 ATGCCTTCCTTATC 6929724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325641813301055