Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq107 96.9 3e-15 seq5 95.1 9e-15 seq255 91.5 1e-13 seq49 87.8 1e-12 seq121 86.0 5e-12 seq4 86.0 5e-12 seq28 82.4 6e-11 >seq107 Length=6112886 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||| || ||||| ||||| || || | | || | ||| || ||||| Sbjct 2237184 ATGAAGAATGGACTCATTTTGGATGTTGTAGTCAGACAAAGTATGTCCATCTTCAAGTTG 2237125 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| ||||| | ||||||||||| ||||| || ||||| || || || || || | || Sbjct 2237124 TTTACCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2237065 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 |||||| |||||| | || || |||| || || ||||| ||||| || || | Sbjct 2237064 GGCCTTGACATTTTCTATCATATCTGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCCAT 2237005 Query 29763 TAAGGTTTTAACAAATATCTGCATTTTA 29790 | |||||| | | |||||||| ||| Sbjct 2237004 AAGGGTTTTTATGAGAATCTGCATCTTA 2236977 >seq5 Length=50938590 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||| |||| || || | | || ||| || | ||| Sbjct 5964010 ATGAAGAGTGGACTCCTTTTGGATGTAGTAGTCAGACTAAGCACGTCCATCTTCAACTTG 5963951 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| | |||| | ||||||||||| |||| || ||||| || || || || || | || Sbjct 5963950 TTTACGAGCAAAGATCAATCTTTGTTGATTGGGAGGAATTCCTTCCTTTTCCTGGATCTT 5963891 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 |||||| |||||| || | ||| |||| || || ||||| | |||||| || | Sbjct 5963890 GGCCTTGACATTTTCTATTGTAACTGAAGGTTCCACCTCGAGAGTAAAAGTTTTCCCCAT 5963831 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | | |||| ||||| |||||||| || Sbjct 5963830 AAGGATTTTCACAAAAATCTGCATCTT 5963804 >seq255 Length=264719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||| ||| || || ||||| ||||| || ||||| || || | | |||| | | Sbjct 227505 CGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCA 227564 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||| || | |||| | |||||||||||| | || || || ||| Sbjct 227565 TCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTG 227624 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||||||| | || |||||| ||||| | || || || Sbjct 227625 TCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATG 227684 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || ||||| || ||||| Sbjct 227685 GTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq49 Length=15761451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| || || ||||| ||||| || ||||| || | || | |||||| ||| Sbjct 14388149 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGTGCGGCCATC 14388208 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || |||||||||||| | |||| | ||| || ||||| || | ||| ||||| Sbjct 14388209 TTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGTC 14388268 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||||||||| || |||||| || | | || || || || Sbjct 14388269 CTGGATTTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGAGGGTGATGGT 14388328 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||| | ||||| || ||||| |||||||| Sbjct 14388329 CTCGCCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 >seq121 Length=4665274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| ||||| || || ||||||||||| || ||||| || || | Sbjct 2221383 CCACCCCTCAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2221442 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 2221443 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2221502 Query 29680 ATACCCTCTTTGTCTTG 29696 || | ||| || || || Sbjct 2221503 ATGCTCTCCTTATCCTG 2221519 >seq4 Length=51989874 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||| ||||| || || | | || | | | || ||||| Sbjct 2293868 ATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTATGTCCAGCTTCAAGTTG 2293809 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| |||||| | | |||||||||||| | | ||||| || || || || || | | Sbjct 2293808 TTTACCAGCAAAGACTAATCTTTGCTGACCAAGAGGAATTCCTTCCTTATCCTGAACCCT 2293749 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| |||||| || || || ||| || | ||||| ||||| || || || Sbjct 2293748 GGCCTCTACATTTTCTATTGTATCTGAGGGTTGAACCTTGAGAGTAATAGTCTTCCCTGT 2293689 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| ||||| |||||||| || Sbjct 2293688 AAGGGTTTTCACAAAAATCTGCATCTT 2293662 >seq28 Length=26224161 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||| | ||||| ||||| || || | | || | ||| |||||||| Sbjct 950189 ATGAAGAGTGGGTATCTTTTGGATGTTGTAGTCAGACAAAGTACATCCATCTTCGAGTTG 950248 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| |||||| | |||||||||||||||| || ||| || || || | || | || Sbjct 950249 TTTACCAGCAAAGATCAATCTTTGCTGAT----CGAAATTCCTTCCTTACCCTGGATGTT 950304 Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 |||||| ||| || | || || ||||| | || ||||| ||||| || || Sbjct 950305 GGCCTTGACATCTTTTTATCATATCCGAGAGTTCAAACTCTAGAGTAATAGTCTTTCCCA 950364 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 | | |||| | ||||| |||||||| || Sbjct 950365 TAAGGGTTATCACAAAAATCTGCATCTT 950392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385158894536145