Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq14 109 4e-18 seq18 96.9 3e-14 seq34 93.3 3e-13 seq24 87.8 1e-11 >seq14 Length=32092909 Score = 109 bits (120), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| ||||||||||||||| ||||| || || | | ||||| |||| Sbjct 9397828 CAAG-CCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATCCGAAGTACATTGAGAC 9397886 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 ||||||| |||| |||||||| || || || | ||| || || || || || ||||||| Sbjct 9397887 CAGCAATGGTTCCAGCATCTTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAAGCAGGAA 9397946 Query 282459 CAGTAATAACGGCAT 282473 | |||| ||| |||| Sbjct 9397947 CTGTAACAACAGCAT 9397961 >seq18 Length=30093284 Score = 96.9 bits (106), Expect = 3e-14 Identities = 179/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 || |||| | |||||||| |||| | ||| | || |||||||||||||| | || | Sbjct 10524083 TGATCATGAAACCACCAGAAGTTTA-ATGCCATGGGAGAGAGGAGTGACATCCAACAGAA 10524025 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || ||||| |||||| | | ||| |||||| ||||| |||| || |||| Sbjct 10524024 GCAGATCTTGAACATTTTCAGACTTGTCTCCAGAAAGAATGGCTGCCTGAACAGTTGCAC 10523965 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||||| ||||| |||||||| || | | | || |||| ||| | ||||| || Sbjct 10523964 CATATGCTACAGCCTCATCAGGGTTGATGCTCTTGTTCAGTTCTTTCCTGTTGAAGCTAT 10523905 Query 281841 TTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 |||||||| ||| | ||| |||||||| | || || || || | ||||| Sbjct 10523904 CCTGAAGAAGTT-TCTGAATCTTGGGAATACGGGTAGAACCACCCACCAGGACAATAATG 10523846 Query 281900 TGCACCTGTGATTTATCCA 281918 || | ||| ||||| |||| Sbjct 10523845 TGGATCTGGGATTTGTCCA 10523827 >seq34 Length=23251817 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| || ||||| || || ||||| || ||| | || || ||| | Sbjct 20719986 TGTACACTGATCCTGACTGAAGGAGACTCGGCCAAAACTTTGGCTGTTTCAGGGCTTGGT 20719927 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | ||||| ||||||||||||||||||||| | | |||||| | Sbjct 20719926 GTGGTTGGAAGAGACAAATATGGGGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 20719867 Query 400417 GATGCTAGTCCTAA 400430 || ||| || ||| Sbjct 20719866 GAAGCTTCTCATAA 20719853 >seq24 Length=28330146 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 ||||| || ||||| ||||| ||||| ||||| ||| | || || || || |||||| Sbjct 13692978 GTAGCTACCATAGCTTTTGGAATGGGAATTAACAAAGCTGACATTCGAAGAGTCATTCAT 13692919 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||| || || ||||| ||||| ||||| ||| Sbjct 13692918 TACGGTGCCCCTAAGGAAATGGAATCGTATTACCAGGAGATTGGCAGAGCTGGTCGAGAT 13692859 Query 131300 GGA 131302 ||| Sbjct 13692858 GGA 13692856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739999764782970