Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq21 91.5 1e-13 seq13 91.5 1e-13 seq134 82.4 7e-11 >seq21 Length=29177037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 |||||| | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 16234652 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCA-T 16234710 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||||||||||||| |||||| | || ||||| || || || ||||| || | Sbjct 16234711 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTAT 16234770 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || || | | ||| | ||| || | |||||| || || | ||| | | Sbjct 16234771 CCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAG 16234830 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || || | ||||| ||||| || ||||| Sbjct 16234831 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 |||||| | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 25852505 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCA-T 25852563 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||||||||||||| |||||| | || ||||| || || || ||||| || | Sbjct 25852564 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTAT 25852623 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || || | | ||| | ||| || | |||||| || || | ||| | | Sbjct 25852624 CCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAG 25852683 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || || | ||||| ||||| || ||||| Sbjct 25852684 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq134 Length=4000202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| | ||||| || || || ||||| |||| ||| || || || | | || Sbjct 2759348 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACACCCATC 2759407 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| ||||||||||||||| |||||| | || |||||||| || || ||||| || || Sbjct 2759408 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATC 2759467 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || || | | ||| | ||| || | |||||| || | | ||| | || Sbjct 2759468 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTGATAGT 2759527 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || | | ||||| ||||| || ||||| Sbjct 2759528 CTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488465558154000