Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1111 141 9e-29 seq255 113 4e-20 seq96 96.9 3e-15 >seq1111 Length=9394 Score = 141 bits (156), Expect = 9e-29 Identities = 158/206 (77%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || | ||| | | | ||||| |||| Sbjct 115 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCA-TCCTCCAGCT 173 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | |||||||| |||| || |||||||||| || ||||||||||||||||| ||| | Sbjct 174 GTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGAT-T 232 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| Sbjct 233 TTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCC 292 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 293 GTCAGGGTCTTCACAAAGATCTGCAT 318 >seq255 Length=264719 Score = 113 bits (124), Expect = 4e-20 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | ||||| ||||| |||| Sbjct 227522 GGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCA-TCCTCCAGCTGTTTGC 227580 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 || | |||| || |||||||| || || |||||||||||||||| ||| ||| || Sbjct 227581 CCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGAT-TTTAGCT 227639 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| ||| ||| || | || ||||| ||| ||||| ||||| Sbjct 227640 TTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGCCCGTCAGG 227699 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| Sbjct 227700 GTCTTCACAAAGATTTGCAT 227719 >seq96 Length=7287561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 133507 CCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT 133566 |||| ||||| |||||||| |||| || ||||| ||||| || ||||||||||||||| Sbjct 3530391 CCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATGCCTTCCTTGT 3530450 Query 133567 CGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 | ||| ||| || |||| | ||| | ||||| || |||| || | || || || | Sbjct 3530451 CCTGGATTTTTGGCTTTGATATTCTCCAATGTGTCACTGAGCTCTACCTTGAGGGGGATG 3530510 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || || || |||||||| Sbjct 3530511 GTCTTGCC-ATCAGGGTCTTCACAAAGATCTGCAT 3530544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483343180747800