Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq61 280 2e-70 seq23 122 1e-22 >seq61 Length=12918418 Score = 280 bits (310), Expect = 2e-70 Identities = 643/959 (67%), Gaps = 13/959 (1%) Strand=Plus/Minus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119 ||||| ||||| || || | ||| || || ||||||| || || | ||| || Sbjct 5050359 CAGGGCTTTATGCCGCAGGTGCTCATCCAGGCACTGGATGGCAAAAAGGTCCACATCAGT 5050300 Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 || || || || || || | ||| |||| | | || |||| || | ||| || | Sbjct 5050299 GTCAAATTTATTGGCAAATAAGTGGTGCGTGCCCAGCA---TCCACTTCAAATCACCGGC 5050243 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| |||||||||||||| |||| || || |||||||| || || || | || || | Sbjct 5050242 TCCAAACACGCACACGGAGCGCAGATGGACCCCGCTGCAGGGGGGGTAGGGCGCGCCCTT 5050183 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | | || || || |||| |||||||| || ||||| | || ||||||| || Sbjct 5050182 GGCAGTGTCACCTTCAAAGTACTGCCACTTGACAAACCTCACACTGGCAAGCATGTCAGA 5050123 Query 162300 GGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||||| | | | || || || || || | || | | ||| | || Sbjct 5050122 CATGTCGTACTTGTGGCTTAAGGACATGGAGCCTGGGACTTCAGGGATCCGCTGAATCGT 5050063 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 ||||| || | || || || || || || ||||||| ||||||||| ||| | || Sbjct 5050062 GGCCCAGAGATACTCATCAGGGCTGTAGGTGTCCTTCGCCCACTCCATAAACCTCTGGAT 5050003 Query 162420 CGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC 162479 ||| || | || | ||| || | ||| | || | |||||| || || || Sbjct 5050002 TCTTTCATTCTCTAACACGTACCCCACAAACTGCCTACTAACCACAAAGTAGGCACTGCC 5049943 Query 162480 AGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCAT 162539 |||||| | ||| | | | |||||||||| ||||||| ||| || ||| | | | Sbjct 5049942 AGAAAAGAGAGGTGTCTGGAGAGGAGGGGGCGCTTTGTCGGCACCAGTTTTGGTCAGC-T 5049884 Query 162540 TCCCTCT-ACGACCACGT-GTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| || || || ||| || | ||| ||||||| || ||||| ||| | | | Sbjct 5049883 TCCCGCTGACCACTTCGTAGTGT-TTCTTCCACCTTTCCTTCTTATTGGGCGGCATTTTC 5049825 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || ||||| || |||| | |||| ||| | ||| |||| | || || || || ||| Sbjct 5049824 TCTGTCTCCAGGTTGTTTCCACCCATCAATGACTTGAGCTTCCTGACAATTTCCAGGTTG 5049765 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || || | || || || ||||||||||||| || | || ||||| | | || | Sbjct 5049764 GTTTTGATCGGGAAATCCATGCCGCAGAGATTTATCAGGTACTTCCATGTGGCACTCATG 5049705 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | |||||| ||||| | ||||| || || ||||||||||| ||||| || || || || Sbjct 5049704 CGGTACAGGTCCTGCATGCAGTTGAGGTCTGCCTGGACGCGGCTCCATGAAGCATAGACC 5049645 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 ||| |||||| || |||| ||||| ||||| | |||||| || | || || | || Sbjct 5049644 ACGTTCTCCAGCCGGCTGGCTACAAACACATTATTGAAACAGGATGCAATGCCAGTTACT 5049585 Query 162838 G---CCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 | |||| || || || |||| ||| | || || || | ||| || | |||||| Sbjct 5049584 GCCCCCAGAAAGGAC-TC--CTCCGATTTTTTGTCCACATGAATGCAATAAAAATTCTGG 5049528 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || ||||| || | ||| | || || ||||| || || ||||| || ||||| || Sbjct 5049527 GGCATATAGATAGCGCGCAGGAGCCTGTCCAACATTTCGATTTTATGATGGACCACTATC 5049468 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCG 163013 ||||| || || || ||||||||||| || ||||| | | | || || |||||||| Sbjct 5049467 GAATAAGCGATTGGAAACTCAGCCTCTTCCTTGCTGAGGGGCTCGGTGAAATACTTGCG 5049409 >seq23 Length=28655905 Score = 122 bits (134), Expect = 1e-22 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 171806 CCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTC 171865 || ||||| || ||||| || | ||| | |||| | || || |||| ||| || ||| Sbjct 14175501 CCAGACCCGAAGGTATTGAAGAGGCACTTGTAACACTCCTCATCATCCAGGGTAGTATTC 14175560 Query 171866 CAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTAC 171925 || || || | || || | | |||| | ||||| || ||||| | | ||||| || Sbjct 14175561 CAGAAGGTAAGGGTTGACTCTTTGAGGTCCAGTTGGGTGATGTTTATCTTATCCTTATAG 14175620 Query 171926 GGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTA 171985 |||||| || ||||| || |||| |||||| |||||||| ||||| || || | Sbjct 14175621 TCAGGCTGAACCACAACTCCAAACTTCTTGCTGAATGTGGCCATATTTTCTGGACTTAAA 14175680 Query 171986 GCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTT 172045 | | || |||||||| || || || | |||||| | |||| |||||||||||| Sbjct 14175681 CGCCTGATTTTCTGCCATGTCACAATCACAACTTCCGCGGAACTTTGCAGAGAGCATCTT 14175740 Query 172046 AAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092 || ||||||| | || |||| || ||| | | ||| || ||||| Sbjct 14175741 AAGGAAGCAGACGAGTGCAATGGCTCGCTTACATTTTGAGTCACCAC 14175787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578339125512000