Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1111 104 2e-17 seq255 91.5 1e-13 >seq1111 Length=9394 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 ||| ||| || ||| |||||| || |||||||| || ||||| ||||| | || |||| Sbjct 111 CCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCA 170 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 ||||| || |||||||||| | ||||||| || |||| | ||||| ||||| | Sbjct 171 GCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGA 230 Query 33662 TTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 |||| ||| | || ||| |||||| || | || || || | ||||| || || Sbjct 231 TTTTGGCTTTGAT-ATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 289 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||||||||| Sbjct 290 CCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq255 Length=264719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || |||||||| || ||||| ||| | | || |||| ||| Sbjct 227517 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGCTGT 227576 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||| |||||||||||| || | | ||||| ||||| ||||| Sbjct 227577 TTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGATTTT- 227635 Query 33667 TGTTTCAACATAGTCA-CGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| ||| |||||| || | || || | | ||||| || || || || Sbjct 227636 AGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGCCCGT 227695 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||| ||||| Sbjct 227696 CAGGGTCTTCACAAAGATTTGCAT 227719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328652541902400