Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21 111 4e-19 seq13 111 4e-19 seq69 105 2e-17 seq57 98.7 2e-15 seq134 91.5 3e-13 seq39 91.5 3e-13 seq5 91.5 3e-13 seq4 89.7 1e-12 seq29 84.2 5e-11 >seq21 Length=29177037 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || || | ||| Sbjct 16234849 AAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCGGATACGATAGAAAAT 16234790 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || ||| | ||||| Sbjct 16234789 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAGAGATTGATCTTT 16234730 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 16234729 GCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 16234670 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || |||||||||||||| Sbjct 16234669 ACTCTTCATCTCGTTTTGAGACTTCG 16234644 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| || |||||||| ||||| || |||| || ||||||| |||||| Sbjct 16234644 CGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 16234703 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| || || || || || ||||| | | |||||| Sbjct 16234704 CGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGA 16234748 >seq13 Length=31987310 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || || | ||| Sbjct 25852702 AAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCGGATACGATAGAAAAT 25852643 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || ||| | ||||| Sbjct 25852642 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAGAGATTGATCTTT 25852583 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 25852582 GCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 25852523 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || |||||||||||||| Sbjct 25852522 ACTCTTCATCTCGTTTTGAGACTTCG 25852497 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| || |||||||| ||||| || |||| || ||||||| |||||| Sbjct 25852497 CGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 25852556 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| || || || || || ||||| | | |||||| Sbjct 25852557 CGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGA 25852601 >seq69 Length=11345371 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206174 AGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA 206233 |||| ||| ||||| || | || || || |||||| |||| || ||| || || | Sbjct 5551964 AGATGTTTGTGAAAACCCTTTCGGGGAAGACTATCACTCTGGAGGTCGAACCCTCGGATA 5552023 Query 206234 CAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA 206293 || | ||| || ||| ||| | || || |||||||||||| || || || | Sbjct 5552024 CAATAGAAAATGTCAAGGCCAAGTTCCAGGATAAAGAAGGAATTCAACCCGATCAACAGA 5552083 Query 206294 GACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCC 206353 || | || || || || || || | ||||||||| | ||||| | || |||||| ||| Sbjct 5552084 GATTGATTTTTGCTGGTAAACAACTTGAAGATGGATGTGCTTTGTCTGACTACAACATCC 5552143 Query 206354 AGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | | ||||| |||||||| || ||||||||||||||| Sbjct 5552144 AAAGGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGA 5552181 >seq57 Length=13814656 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||| || || || |||||| | || || ||| | || || || ||| Sbjct 7965529 AAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCCTTGGATAC-GTAGAAAAT 7965587 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || ||| ||||| Sbjct 7965588 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAACAGAGATGGATCTTT 7965647 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||||||| | |||||| | || |||| | |||| || ||||| Sbjct 7965648 GCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAGCATCCAAAAGGAGTCC 7965707 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || |||||||||||||| Sbjct 7965708 ACTCTTCATCTCGTTTTGAGACTTCG 7965733 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| || |||||||| ||||| || |||| | ||||||| |||||| Sbjct 7965733 CGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTA 7965674 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | ||||||||| || || || || || ||||| Sbjct 7965673 CGTCCATCTTCAAGTTGTTTACCAGCAAAGAT 7965642 >seq134 Length=4000202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || | || || || |||||| | | || ||| || || || | ||| Sbjct 2759545 AAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCCTCGGATACGATAGAAAAT 2759486 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || ||| | ||||| Sbjct 2759485 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAACAGAGATTGATCTTT 2759426 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | |||||||| | |||||| | || ||| || |||| || ||||| Sbjct 2759425 GCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTACCACATCCAAAAGGAGTCC 2759366 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| || ||||||||||||| Sbjct 2759365 ACTCTTCATCTCGTTTTGAGACTTC 2759341 >seq39 Length=20300788 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| || |||||||| ||||| || |||| || ||||||| |||||| Sbjct 4804626 CGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 4804567 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| || || || || || ||||| | | |||||| Sbjct 4804566 CGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGA 4804522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || ||| | ||||| || || || || | ||||||||| | |||||| | || |||||| Sbjct 4804526 CAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAAC 4804585 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| || ||||| |||||||| || |||||||||||||| Sbjct 4804586 ATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCG 4804626 >seq5 Length=50938590 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||| || | || ||||| | ||| | || |||||| ||| | Sbjct 5963810 CAGATTTTTGTGAAAATCCTTATGGGGAAAACTTTTACTCTCGAGGTGGAACCTTCAGTT 5963869 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| || ||||| ||||||||| || | ||| Sbjct 5963870 ACAATAGAAAATGTCAAGGCCAAGATCCAGGAAAAGGAAGGAATTCCTCCCAATCAACAA 5963929 Query 206293 AGACTTATCTTCGC-CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| || || ||| ||||| |||||||| | ||| | | || ||| || | Sbjct 5963930 AGATTGATCTTTGCTCGTAAACAAGTTG-AAGATGGACGTGCTTAGTCTGACTACTACAT 5963988 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||| || ||||| |||||||| || ||||||||||| Sbjct 5963989 CCAAAAGGAGTCCACTCTTCATCTCATTTTGAGACTT 5964025 >seq4 Length=51989874 Score = 89.7 bits (98), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||||||||| |||||||| ||||| ||||| ||| ||||||| |||||| | Sbjct 38965426 AAGTCTCAAAACAAGATGAAGAGTGGACTC---CTGGATATTGTAGTCAGACAAAGTACA 38965482 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 ||||||||| || || || || || ||||| Sbjct 38965483 TCCATCTTCAAGTTGTTTACCAGCAAAGAT 38965512 >seq29 Length=25414214 Score = 84.2 bits (92), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || || || || Sbjct 3399178 CAGATTTTTGTGAAAACCCTTACGGGGAAGACTATCACTCTTGAGGTCAAACCCTCAGAT 3399119 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||||||| | ||| | Sbjct 3399118 ACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCATCTGACCAATAG 3399059 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA---- 206348 ||| | ||||| || || || || | ||||||||| | |||||| | || ||||| Sbjct 3399058 AGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAATATC 3398999 Query 206349 -------CGTCCAGAAAGAGTCTACTCTTCACCT-TGTTTTGAGACTTCG 206390 | |||| |||||||| |||||||| || ||||||||||||||| Sbjct 3398998 CAAACAACATCCAAAAAGAGTCCACTCTTCATCTCTGTTTTGAGACTTCG 3398949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181626299995245