Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq119 100 3e-16 seq21 91.5 1e-13 seq13 91.5 1e-13 >seq119 Length=4927305 Score = 100 bits (110), Expect = 3e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||| | || | ||| | |||||||||||||||||| ||| |||||| || ||||||| Sbjct 3051867 TGTATTCTACTACTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGAT 3051808 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||||||||||||| | |||||| |||||||||| || Sbjct 3051807 TACTTTTCCGATTGCAGGAATCTTTGTAGAGCATGTAGGG 3051768 >seq21 Length=29177037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| | ||| | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 16234652 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 16234711 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || |||||||| | | |||| | | ||||||||| || || || ||||| ||||| Sbjct 16234712 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 16234771 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||||| | || || || |||| || | || Sbjct 16234772 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 16234831 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| | |||||||||||| Sbjct 16234832 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| | ||| | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 25852505 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCATC 25852564 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || |||||||| | | |||| | | ||||||||| || || || ||||| ||||| Sbjct 25852565 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATC 25852624 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||||| | || || || |||| || | || Sbjct 25852625 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 25852684 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| | |||||||||||| Sbjct 25852685 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476534674114200