Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq224 107 6e-20 seq37 105 2e-19 seq238 104 7e-19 seq169 98.7 3e-17 seq46 98.7 3e-17 seq11 98.7 3e-17 seq80 95.1 4e-16 seq68 95.1 4e-16 seq29 86.0 2e-13 >seq224 Length=581592 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 137953 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 137894 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 137893 TCCCGGGTTTCGGC 137880 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 109146 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 109205 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 109206 CCGGGTTTCGGC 109217 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 51688 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 51747 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 51748 CCGGGTTTCGGC 51759 >seq37 Length=21270769 Score = 105 bits (116), Expect = 2e-19 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 8694251 AAATATCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 8694310 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 8694311 GTTTCAGC 8694318 >seq238 Length=377707 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 167438 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 167379 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 167378 CCGGGTTTCGGC 167367 >seq169 Length=2430010 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 42719 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 42660 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 42659 CCGGGTTTCGGC 42648 >seq46 Length=16750451 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1804469 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1804528 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1804529 CCGGGTTTCGGC 1804540 >seq11 Length=34296310 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 33693336 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 33693277 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 33693276 CCGGGTTTCGGC 33693265 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct 9204005 AATTAGCTCAGTTGGAAGAGCGTTAGACTGAAGATCTAAAGGTCCCTAGTTAGATCCCGG 9204064 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 9204065 GTTTCAGC 9204072 >seq80 Length=9266355 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 4807378 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGCTC 4807319 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4807318 CCGGGTTTCGGC 4807307 >seq68 Length=11632308 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| | Sbjct 4655597 TAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCTCTGGTTCAATCCCGGGTT 4655656 Query 2836 TCAGC 2840 || || Sbjct 4655657 TCGGC 4655661 >seq29 Length=25414214 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||||||| |||||||||| |||||||||||||| || ||| || Sbjct 24333892 TGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAATATCTAAAGGTCCCTAGTACAATCCT 24333951 Query 2831 GGGCTTCAGC 2840 ||| ||| || Sbjct 24333952 GGGTTTCGGC 24333961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847373255025