Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq23 201 1e-46 seq19 178 2e-39 seq40 136 5e-27 seq77 113 5e-20 >seq23 Length=28655905 Score = 201 bits (222), Expect = 1e-46 Identities = 216/284 (76%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || ||||||||||| || || || ||| |||| ||||| ||| |||| || |||| Sbjct 14172687 TCCCAGTACAGCCCACTGTATTCCTTCACTATGAATTCTTTGAAGACTACCTAAATATCA 14172628 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | |||||||||||| | || || | ||| ||| | ||||||||||| ||||||| || Sbjct 14172627 CTTGTTCTGCCAATTCTCGGCCAGCGCCTGTGATCTCCTGGAAGATTTCTGGGTCAGGAA 14172568 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCC--CATTCTAATGGAACTACTTCTGTAACCAGTGT 171565 | || |||| | ||| || ||| || | ||||| || || ||||| | |||||| Sbjct 14172567 TAGAGAACACAACTGAG--ACTATCCTACACCCCAATGGGACCACGTCTGTCATCAGTGT 14172510 Query 171566 ACTCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCA 171625 ||||| || ||||| || |||||||| |||| ||||||| |||||||| |||| ||| Sbjct 14172509 TCTCCATGTCAAAGATCCTGAGAGTCAGATGGGGAAGGAGGCAATCTGCCAGGTGTTGCA 14172450 Query 171626 CCTGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||||| | ||| |||| ||| ||||||||| | | ||| |||| Sbjct 14172449 CCTGGGGACTGTTACTATCTTTAGGGAAACTATCAACAAAGGTA 14172406 Score = 190 bits (210), Expect = 2e-43 Identities = 234/320 (73%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| || ||| || | || || || || | || ||| | | |||||| ||| Sbjct 14175787 GTGGTGACTCAAAATGTAAGCGAGCCATTGCACTCGTCTGCTTCCTTAAGATGCTCTCTG 14175728 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| ||| || ||||||| || ||||||||||||| || | |||||| Sbjct 14175727 CAAAGTTCCGCGGAAGTTGTGATTGTGACATGGCAGAAAATCAGGCGTTTAAGTCCAGAA 14175668 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 || ||| || || ||||| | || || ||||| ||||| | |||||||| ||| Sbjct 14175667 AATATGGCCACATTCAGCAAGAAGTTTGGAGTTGTGGTTCAGCCTGACTATAAGGATAAG 14175608 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||| || | ||| || | |||||| | || || |||||||| ||| | Sbjct 14175607 ATAAACATCACCCAACTGGACCTCAAAGAGTCAACCCTTACCTTCTGGAATACTACCCTG 14175548 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| |||||||| || ||||| ||||||||| | ||||| || Sbjct 14175547 GATGATGAGGAGTGTTACAAGTGCCTCTTCAATACCTTCGGGTCTGGGCAGATCTCTGGA 14175488 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || ||||||||| ||||| Sbjct 14175487 GTCACCTGCCTCAGTCTCTC 14175468 >seq19 Length=29725166 Score = 178 bits (196), Expect = 2e-39 Identities = 139/166 (84%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || ||||| ||||| || | |||||||||||| || ||||||||||| |||||||| Sbjct 5420994 CTTCAGACCGGTGACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAA 5421053 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 5421054 GGGCACGCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTT 5421113 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||| || |||||||| ||| |||||| || || || |||||| Sbjct 5421114 CACCACATAGAACTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATG 5421159 >seq40 Length=19741185 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct 7972815 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGGAGAAGGTGA 7972874 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | | || ||||| ||||||||||| |||| Sbjct 7972875 TGCCCCAGGCTGAGAACCA------------AAGTCCAGACATCAAGGAGCATGTGAACT 7972922 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | | || |||||| | |||||||| || |||| ||||| || ||| Sbjct 7972923 CCTTAGGAGAAAAGTTGAAGACCCTCAGGCTGAGTCTGCGTCGCTGT 7972969 >seq77 Length=10001809 Score = 113 bits (124), Expect = 5e-20 Identities = 210/309 (68%), Gaps = 16/309 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || ||||| ||| | |||| || || ||||| ||||||||| || ||||| || Sbjct 1054686 GTATTCCCTGGTATTTATTATTGGACTGATCGGCAACATCCTGGTGATGCTGGTCCTTAT 1054745 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||| |||| | | |||||| ||| | ||| ||||||||||| || ||| Sbjct 1054746 CCTGTACAAGAGACTCAAAAGCCTGACCAGCATTTACCTCCTCAACCTGGCCGTTTCTGA 1054805 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTC-CACTCGGGGGGAACTGG-- 8786 |||||| | | ||||| || ||||| |||||| | | | ||| || |||||| Sbjct 1054806 CCTGCTCTTCCTCTTCACTCTGCCCTTCTGGATTGATTACAAACTGAAGGATAACTGGAT 1054865 Query 8787 --TGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCA 8844 | |||| || ||||||||| || | || ||| |||| | | Sbjct 1054866 TTTCGGTGATAC-----------CATGTGTAAATTCCTCTCAGGGATTTATTACGTAGGA 1054914 Query 8845 CTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTG 8904 ||||||| || || | |||||||||||| |||| | |||||||| | || |||| Sbjct 1054915 TTGTACAGTGAGATCTTTTTTATCATCCTGCTGACAATCGACAGGTACTTAGCCATTGTC 1054974 Query 8905 TACGCGGTG 8913 |||| ||| Sbjct 1054975 CACGCTGTG 1054983 Score = 104 bits (114), Expect = 3e-17 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||| ||| || | || || | ||||| | | ||| | | |||| | Sbjct 995002 GTACTCTCTGGTATTTGTGGTGGGTCTGCTGGGCAACGTGGTCGTGGTGGTGATCCTGAC 994943 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||| ||| |||| ||| |||||||||||||||||| |||| ||||| || ||| Sbjct 994942 CAAATACAGGAGACTCAAGATAATGACCAACATCTTCCTGCTCAATCTGGCTATTTCTGA 994883 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || | ||| |||||||| | |||| || | || Sbjct 994882 CTTGCTCTTTCTGTTCACTCTGCTTTTTGGGATTCAC-TATGTTCGGTGGAA-----TGA 994829 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | | |||||||||| | | ||| |||| || ||| |||| Sbjct 994828 GTGGGTATTTGGCAATATCATGTGTAAGGTCCTCTCGGGGCTTTATTACATGGGTTTGTA 994769 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||| ||| || | || |||||| || |||| | ||||| ||| | || ||||| Sbjct 994768 CAGTGAAATCTTTTTCATCATCTTGCTGACCATAGACAGATATTTGGCTGTTGT 994715 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || || | | || || ||||| ||||| ||| || Sbjct 895319 TACTCACTGGTGTTCATCTTCGGATTCCTGGGAAACCTGCTGGTCATCCTCACCCTGATC 895260 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| ||| | || ||||| | |||||| |||| ||||||||||| | |||| Sbjct 895259 AACTGCAAGAAGCTGAAGAGCATGAGCGACATCTACCTGCTCAACCTGGCCATCTCTGAC 895200 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | |||||||| ||||||||| Sbjct 895199 CTGCTCTTCCTCTTCACCCTTCCCTTTTGG 895170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || || | | || || |||||| |||| ||| || Sbjct 910260 TACTCACTGGTGTTCATCTTCGGATTCCTGGGAAACCTGCTGGTGGTCCTCACCCTGATC 910201 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| ||| | || ||||| | |||||| |||| ||||||||||| | |||| Sbjct 910200 AACTGCAAGAAGCTGAAGAGCATGAGCGACATCTACCTGCTCAACCTGGCCATCTCTGAC 910141 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||||||||||||||| Sbjct 910140 CTGCTCTTCCTCATCACCCTCCCCTTTTGG 910111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583394313708000