Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1111 104 2e-17 seq29 86.0 6e-12 >seq1111 Length=9394 Score = 104 bits (114), Expect = 2e-17 Identities = 146/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| || | || |||||||| || |||||||| Sbjct 127 CTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 186 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| |||||||||||| || | || ||||||||| ||| ||| || || | | Sbjct 187 AATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGATAT 245 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | || ||||| | ||||| || || ||||||| || |||| Sbjct 246 TCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 305 Query 35724 CAAATATCTGCATTCTGTGCG 35744 |||| ||||||| ||| |||| Sbjct 306 CAAAGATCTGCA-TCTCTGCG 325 >seq29 Length=25414214 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 35550 TTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCA 35609 |||| || ||||| || | ||| || || | || || || || ||||| ||||| |||| Sbjct 3398995 TTTGGATATTGTAGTCAGACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCA 3399054 Query 35610 ACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCA 35669 | | || ||||| || |||| | ||||| ||| |||||| ||| | | || | | Sbjct 3399055 ATCTCTATTGGTCAGATGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTA 3399114 Query 35670 CCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATA 35729 ||| || | || ||||| | ||||| || || ||||| | ||||||||||| | Sbjct 3399115 TCGTATCTGAGGGTTTGACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAA 3399174 Query 35730 TCTGCAT 35736 ||||||| Sbjct 3399175 TCTGCAT 3399181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450721219452600